Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1468 147 7e-30 seq357 141 3e-28 seq754 84.2 7e-11 >seq1468 Length=25427 Score = 147 bits (162), Expect = 7e-30 Identities = 927/1472 (63%), Gaps = 18/1472 (1%) Strand=Plus/Plus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 || || ||| | || || || || || || |||| ||| ||||| || || || || || Sbjct 16146 GGCATTGATCTGGGCACGACGTACTCGTGCGTTGGTGTGTGGCAGAACGACCGCGTGGAG 16205 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || || || ||||| || || ||| | || || || || ||||| || || || || || Sbjct 16206 ATCATCGCCAATGACCAGGGCAACCGCACCACCCCGTCGTACGTGGCGTTCACGGATACC 16265 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 |||||| |||| |||||| | || || || |||| ||| || | | || ||||| Sbjct 16266 GAGCGTCTGATCGGTGATGCGGCCAAGAACCAAGTGGCTATGAACGCCCACAACACGGTG 16325 Query 349385 TTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGATCTA 349444 ||||||| ||||| || || || | | || | ||| | || || || | Sbjct 16326 TTTGATGTCAAGCGCCTCATCGGCCGCAAGTTCACGGACCCAGAAGTGCAGTCGGACATC 16385 Query 349445 AAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATT-GAGGTTGA 349503 || || | || || | || || ||| || || | | | | ||| | Sbjct 16386 AAGCACTGGCCGTTCAAGGTGACTCGTGGCC-CGGAGAACAAGCCTCAAGTCGTGGTGCA 16444 Query 349504 ATATAAAGGTGAA-CAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTA 349562 | || || || | || || || || ||||| || || || ||||| | | | Sbjct 16445 GTTCAAGGGCGAGTCCAAGACG-TTCCAGCCTGAAGAGATCTCGTCCATGGTGCTGATCA 16503 Query 349563 AAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTG 349622 | ||| || || || || || || | || | ||| | |||| || | || | Sbjct 16504 AGATGCGCGAGATCGCCGAGGCGTACATCGGCAAGCAAGTGAAGAATGCCGTGGTGACGG 16563 Query 349623 TACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGG 349682 | || || ||||| || || | ||||| || || || ||||| ||| || || | Sbjct 16564 TGCCGGCGTATTTCAACGACTCGCAGCGCCAAGCTACGAAGGATGCCGGCGCTATCGCTG 16623 Query 349683 GGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTG 349742 || | || || || | || || || || || || ||||| || ||||| || || || | Sbjct 16624 GGCTGAACGTCCTGCGTATCATCAACGAGCCGACGGCTGCTGCTATTGCCTACGGCCTGG 16683 Query 349743 ATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTG 349802 | || | | ||| | | | | || | || || |||||| | || || || || |||| Sbjct 16684 ACAAGAAGGGTGGCGA-GCACAACGTGTTG--ATCTTTGATCTGGGAGGCGGAACGTTTG 16740 Query 349803 ATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATA 349862 | || || || || || | ||||| || || || || || || || || || || || | Sbjct 16741 ACGTCTCGCTCCTTACGATCGAAGAAGGCATCTTCGAGGTGAAGGCGACGGCGGGCGACA 16800 Query 349863 CACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTA 349922 | || | ||||| || || ||||| || ||| | || | | || || | || || | Sbjct 16801 CGCACTTGGGTGGTGAGGACTTTGACAACCGTTTGGTCGAGTACTTCGTGACCGAGTTCA 16860 Query 349923 AGCGTCAAGCTAAA--ATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAAC 349980 |||| |||| || | ||| | | | || | | || |||||||| || | || Sbjct 16861 AGCG-CAAG-TACCGCAAGGATCTGGCCGTGAACTCGCGTGCGATGCGTCGTCTCCGTAC 16918 Query 349981 TGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGA 350040 ||||| || || || ||||| | | || || | | ||| | | |||| || || Sbjct 16919 GGCGTGCGAGCGCGCGAAGCGAACGCTGTCCACTTCGGCGCAAGCGTACCTTGAGATCGA 16978 Query 350041 TTCTCTTGCTG-ATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAAT 350099 ||| ||| || | || | || ||| || | ||||| ||||||||||| || || Sbjct 16979 TTCG-TTGTTGGACGGTATCGACTTCAACTCGACCATTACGCGTGCTCGGTTCGAGGATC 17037 Query 350100 TATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAA 350159 | || | || | || | || ||||| ||||||| | || || || | | Sbjct 17038 TGTGCAACGAGTTCTTCCGCAAGACGATGGACCCTGTGGCGCAGGTGTTGCGGGACTCGA 17097 Query 350160 AAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAA 350219 | |||| || | || | | || || ||| | || || || || || ||||| || | Sbjct 17098 AGCTGTCGAAGAGCCAAGTGAACGAGGTGGTTCTGGTCGGAGGGTCGACTCGTATCCCGA 17157 Query 350220 AAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC-CTTCTAGATCAATTAAT 350278 |||| || ||||| | || ||||| |||||||| || | ||| || || || || Sbjct 17158 AAGTGCAGCAGTTGTTGATGGACTTTTTCAATGGCAAGGAGCTGTTCAAG-TCGATCAAC 17216 Query 350279 CCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAAATAAG 350338 || || ||||| || || ||||| || | || || || |||| || ||| ||| | Sbjct 17217 CCGGACGAAGCAGTCGCCTATGGAGCCACCGTGCAAGCCGCTATCCTAAGTGGCAATGAC 17276 Query 350339 AGTTC--TAAAATTG-ATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGATTA 350395 || || ||| | |||||| |||| || || || | || || ||||||| || Sbjct 17277 TCGTCCGCCAAGTTGCAGGATCTACTACTGCTGGACGTGGCCCCGCTGCCGCTTGGGTTG 17336 Query 350396 GAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACAAAA 350455 || || |||||| ||| ||||| || || || | || | || | ||| | || Sbjct 17337 GAGACCGCTGGTGGAGTCATGACGAAACTCATCCCGCGTAACACGACGATTCCTTCCAAG 17396 Query 350456 AAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGTATTT 350515 ||| | || | || || || | |||||| || ||| | | ||| ||||| || || Sbjct 17397 AAGACGCAGTCGTTCTCGACGTATGCAGACAACCAGTCCGGGGTGTTGATTCAGGTGTTC 17456 Query 350516 GAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTAAGTGAA 350575 || || || || | || || ||| || ||| ||| | || | || | Sbjct 17457 GAGGGCGAGCGCACAATGACCCGTGACAATCATCTACTGGGAAAGTTCAATCTGGACGGC 17516 Query 350576 ATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTCAAAT 350635 || || || |||||| | || || || ||||| || || | |||||| ||||| || Sbjct 17517 ATCCCGCCCATGCCTCGCGGTGTCCCGCAGATCGACGTAACGTTCGATGTTGATGTCAAC 17576 Query 350636 GGTATTTTAAATGTTACCGCAGTTGAAAAATC 350667 || ||||| || || | || || || || || Sbjct 17577 GGCATTTTGAACGTGTCAGCCGTGGAGAAGTC 17608 >seq357 Length=119206 Score = 141 bits (156), Expect = 3e-28 Identities = 466/719 (65%), Gaps = 9/719 (1%) Strand=Plus/Plus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 || || || || || || || ||||| || || | ||||| || || || || || Sbjct 106076 GCCGTGATCACGGTGCCGGCGTATTTCAACGACTCGCAGCGCCAAGCGACGAAGGACGCC 106135 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || |||||| || | || || || | || || || || ||||| || || || ||| Sbjct 106136 GGTGCCATTGCCGGTCTCAACGTCCTGCGTATCATCAACGAGCCCACGGCCGCTGCCATT 106195 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 || || || || || || | | | | || || | || || || || | ||| Sbjct 106196 GCCTACGGTCTGGACAAGAAGGGCGGT---GAGCGTAACGTGCTGATCTTCGACCTGGGT 106252 Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849 || ||||| || ||||| || || || | |||| ||||| || || || || || || Sbjct 106253 GGCGGTACCTTCGATGTGTCGCTGCTGTCCATTGAGGAGGGCATCTTCGAGGTGAAGGCC 106312 Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTT 349909 ||||||||||| || || || ||||| || || || || || |||||||| || || Sbjct 106313 ACTGCTGGTGACACGCACCTGGGTGGTGAGGACTTCGACAACCGTCTCGTCGACCACTTC 106372 Query 349910 GTTAAAGAATTTAAGCGTCAAGCTAAA-ATTGATATTGGAGATAATCCTAGAGCAATGCG 349968 | || || |||||| |||| | || || || || | | || | || Sbjct 106373 ACGCAGGAGTTCAAGCGT-AAGCACCGCAAGGACATCACGGAGAACCAGCGCGCTCTCCG 106431 Query 349969 TCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTC 350028 ||| || | ||||| || || |||||||||||| | | || || | |||| | | Sbjct 106432 TCGTCTGCGGACTGCTTGCGAGCGTGCTAAGCGTACGCTTTCGTCGTCGGCCCAGGCTTA 106491 Query 350029 TATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCG 350088 ||||| ||||| ||||| ||||||| || ||| || | || || |||||||| Sbjct 106492 CATTGAGATTGACTCTCTGTTCGATGGCATTGACTTCAACTCGACCATCACCCGTGCTCG 106551 Query 350089 GTTTGAAGAATTATGTATGGATCTTTTTAGAGCA--ACAATGGATCCTGTGGAAAAAGTA 350146 || || || |||| || | | ||| || ||||| || ||||| || || Sbjct 106552 TTTCGAGGA--CATGTGCGGTGACTACTTCCGCAAGACCATGGAGCCCGTGGAGAAGGTC 106609 Query 350147 TTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCT 350206 | ||||| || ||||||| | ||| | | || || || | || ||||| || Sbjct 106610 CTCCGTGATGCCAAGCTGTCCAAGAGCCAGGTGCACGAGGTCGTCCTGGTCGGTGGCTCC 106669 Query 350207 ACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCT 350266 || ||||| || || || || ||| | || || || || || || ||||| || || Sbjct 106670 ACCCGTATCCCCAAGGTGCAGCAGCTGCTGTCGGACTTCTTCAACGGCAAGGAGCCCAAC 106729 Query 350267 AGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTT 350325 | || || || || ||||| |||||||| || ||||| | || ||||| | ||||| Sbjct 106730 AAGTCCATCAACCCTGATGAGGCTGTTGCCTACGGTGCCACCGTCCAGGCTGCCATTTT 106788 >seq754 Length=92072 Score = 84.2 bits (92), Expect = 7e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 74488 GTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCTACCCCCTTAGACCAC 74547 |||||||| |||||||||||| | ||||||||||||||||||||||||||||||| | Sbjct 4755 GTGGGATTTGAACCCACGAGTGCGAACACAGTAGAACTTGAGTCTACCCCCTTAGACCGC 4696 Query 74548 TCGG 74551 |||| Sbjct 4695 TCGG 4692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515223026657648