Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq926 215 6e-51 seq1151 143 3e-29 seq952 138 1e-27 seq1029 125 8e-24 >seq926 Length=67561 Score = 215 bits (238), Expect = 6e-51 Identities = 494/732 (67%), Gaps = 14/732 (2%) Strand=Plus/Plus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||||||||| | ||| |||| || || ||||| ||||| || || || || ||| Sbjct 30337 GAGACGTACGAGCTTATGTCGCAAATGTTTTTCACGCATGCCACCCCGACACTTTTTAAC 30396 Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362 || || ||| | ||| || ||||| |||||||| |||| ||| | || ||||| Sbjct 30397 GCCGGCACGCCGCGCCCACAACTGTCGTCTTGCTTCCTATTGGCCATGCAAGACGACTCA 30456 Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422 || || ||||| ||||| ||| | ||| | |||||| ||||| || ||| | || ||| Sbjct 30457 ATTGAAGGCATTTACGACACGTTAAAGCAATGTGCCTGTATCTCTAAATGGGCCGGAGGT 30516 Query 53423 ATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGG 53481 || || ||| ||| | ||| |||| || | | || ||| || |||||||| Sbjct 30517 ATTGGCATCAGTATGCAC-AACATCCGAGCCACCAACAGCTACATCCGAGGCACGAACGG 30575 Query 53482 CGTCG-CCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCA 53540 | ||| || |||| ||| | || ||||| || || || ||| |||| || |||||||| Sbjct 30576 C-TCGTCCAATGGCATCATCCCCATGCTGCGGGTGTTTAACGACACCGCGCGGTACGTGG 30634 Query 53541 ACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCG 53600 ||||||| || || ||||| ||||| || ||||||||||| | ||||| |||||||| | Sbjct 30635 ACCAGGGCGGAGGCAAGCGTAAGGGCTCCTTCGCCATCTATTTGGAGCCTTGGCACGCAG 30694 Query 53601 ACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC---C 53657 | | | ||||| | || || ||| ||| || || | | ||| ||| | || | Sbjct 30695 ATGTGTTCGAGTTCTTGGACCTCCGTAAGAACCACGG---CAACGAGTTGCACCGCGCTC 30751 Query 53658 GTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGAC 53716 | |||||||| ||| || || ||| | || || || |||||| | | |||||| | Sbjct 30752 GCGACCTGTTCTAC-GCCCTTTGGGTGCCTGATCTGTTCATGAAGAGGGTGGAAGCCAAT 30810 Query 53717 GAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGA 53775 | ||||| || ||||| |||||| ||| || ||| | | ||| || || || Sbjct 30811 GGCAAGTGGAGTCTCTATTGCCCTAACGAGGCCCCTGGACTCTATGAGTG-CTGGGGCGA 30869 Query 53776 GGAGTTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAA 53835 || || | | | ||| | ||||| |||| ||| | |||| | |||| Sbjct 30870 CGAATTCGAGGCCCTCTATGAAAAGTACGAGACGGAGGGACGCGCCCGCAAGACGATCAA 30929 Query 53836 GGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACAT 53895 || | || | ||| || || | | |||| | ||||||||| ||| | || Sbjct 30930 CGCCCAGCAGCTGTGGTTCGCCATATTGGACGCCCAGATTGAGACGGGAGTGCCCTTTAT 30989 Query 53896 GTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATC 53955 || |||||||| ||| |||| ||| |||||||||||| ||||| ||| || Sbjct 30990 GTTGTACAAGGACGCGGCCAACCGCAAGTCGAACCAGAAGAACCTCGGCACGATCCGCTC 31049 Query 53956 GAGCAACTTATG 53967 ||||||||||| Sbjct 31050 CAGCAACTTATG 31061 Score = 212 bits (234), Expect = 7e-50 Identities = 558/833 (67%), Gaps = 39/833 (5%) Strand=Plus/Plus Query 55115 GAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATCGACAAGAATTACTACCCG 55174 ||||||||| || || || || ||| | ||| |||||||||| || |||||||| Sbjct 31174 GAAGTGACGAAGGTGGTCACCCGCAACTTAAACAAGGTCATCGACGTCAACTACTACCCC 31233 Query 55175 ACTGAA-GCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGG 55233 ||| | |||||||||||||||| | || ||||| ||||||| || || || ||||| Sbjct 31234 G-TGATCGAGGCGCGCAAGTCCAACATGCGTCACCGCCCCATCGGTATTGGCGTCCAGGG 31292 Query 55234 CTTGGCCGACATCTTCATGATGCTCGGATTGCCC-TTCGACTCGGAACCTGCTCGAGAAA 55292 | | || ||| || || | | | | | | | ||||| || || || || Sbjct 31293 CCTCGCGGACGCGTTTATCCTCAT-GAACTACGCGTTCGAGAGCGAGAAGGCCCGGGAGC 31351 Query 55293 TTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGCTCGAGGAGTCGT--GTCATC 55349 | ||| || |||||||| || | ||||||||| || || | ||| |||| | ||| Sbjct 31352 TCAACAAGAACATCTTCGAGAC-CATCTACTTCGCCGCCATGGAGACGTCGATGGAGATC 31410 Query 55350 TGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTCGCCAGCTGACAAGGGACTTC 55409 | | | || | || | ||||||||||||| | ||||| ||| |||||| | Sbjct 31411 -GCCAAGGAACTCGGCC-CGTACGAGACGTTCCAGGGCTCGCCCGCTAGCAAGGGCATCT 31468 Query 55410 TCCAGTTCGATCTATGGGGCAAGTCTGACCCCAT------GTTTG----AC------AAG 55453 |||||||||| | |||||| ||| ||||| | || || || | | Sbjct 31469 TCCAGTTCGACATGTGGGGC--GTC--ACCCCGTCGTCGGGTATGTGGAACTGGGCTACG 31524 Query 55454 TTGAAGCATGACATTCACTTGTGGGGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCA 55513 | ||| | ||| | | | || || |||||||| ||||| ||||| || ||||| Sbjct 31525 CTCAAGGAGGACGTGATCAAGCACGGACTCCGCAACTCGCTGCTGGTGGCCCCCATGCCG 31584 Query 55514 ACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCGTACACGACCAAC 55573 || || || ||||| |||||| | || ||||||||| | |||||||||||||| ||||| Sbjct 31585 ACGGCTTCCACGGCCCAGATCCTTGGAAACAACGAGTCTATCGAGCCGTACACGTCCAAC 31644 Query 55574 ATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAG 55633 || ||| ||||| || || || ||||| || |||||||| |||| | ||| Sbjct 31645 ATGTACAACCGCCGAGTGCTGGCTGGAGAGTTCACGATCGTCAACAAGTACCTGATGAAG 31704 Query 55634 GACCTGCAGAAGATCAACAAGTGGAACCCGCA---GATCAAGACGGATATTGTGCGGAAC 55690 || ||| || || || |||| ||| | | ||| | ||| ||| || || Sbjct 31705 GAGCTGATCGAGCTCGGCATCTGGACGCCGGACGTGCGCAA-CCAGATCTTGAACG--AC 31761 Query 55691 GGGGGGTCCGTCCAGAA--TC-TGGAGATTCCTCTGCGTCTCAAGGAGATTTACCGGACG 55747 | || ||||| ||||| || || ||| || | ||||||||| ||| |||| Sbjct 31762 AGCGGCTCCGTGCAGAACGTCAAGGCGATCCCGGACCACGTCAAGGAGAAGTACAAGACG 31821 Query 55748 GTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATC 55807 ||||||||||| |||||| || | ||| || || || || ||||||||||| Sbjct 31822 GTGTGGGAGATCAAGCAGAAGGCGGTGCTGGACCTGTCGGCCGACCGCGGTGCGTACATT 31881 Query 55808 GACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCG 55867 |||| ||||| || |||||| ||| | | || | | |||| | | ||| Sbjct 31882 TGCCAGAGTCAGTCGCTCAACATCCACATCGCCGACCCGACCATCAGCAAGCTCACGTCG 31941 Query 55868 ATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCG 55920 |||||||| |||| ||||||||||| |||||||| || |||||||| |||| Sbjct 31942 ATGCACTTCTACGCCTGGAAGAAGGGGCTCAAGACCGGCATGTACTACATGCG 31994 >seq1151 Length=161202 Score = 143 bits (158), Expect = 3e-29 Identities = 196/274 (72%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 152027 GCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACT 152086 ||||||||||||| || | ||| || ||||| ||||| || || || || ||||||| Sbjct 141198 GCGTGAAGATGTAACGAGGGCTAGCGGCATCTTTGCCTCCCTGTAGTCGAGTACCAAACT 141257 Query 152087 GTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCA 152146 | || || || | || || |||||||||| ||||||||| | ||| |||| |||| Sbjct 141258 GACCGGACGGATACAGCAGCGGAAGGTTGTTGGAGCCCACGAAGTCCTGTGCCATGTTCA 141317 Query 152147 CAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATC 152206 ||||||| || | || || |||||||| || ||||| || || | ||| | Sbjct 141318 CAATCGTCGAGTGTAACGAAGCCTCGCCGTGGTGGTAGGCCGTGTGTTCACTGCAGTAAC 141377 Query 152207 CCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCA 152266 | || | ||| |||||||||| || |||| || || ||| ||||||||| ||| || Sbjct 141378 CAGCAAGCTGTGCCACCTTCACCTCGCTCGTTAGCTTGCGCTTCAGACAGGCGAAAAGCA 141437 Query 152267 CCTTGCGCTGGGATGGTTTCAAACCGTCCACCAC 152300 |||||||||| || ||| | || || ||||| Sbjct 141438 CCTTGCGCTGCGAGATTTTAAGTCCATCGACCAC 141471 Score = 118 bits (130), Expect = 1e-21 Identities = 279/412 (68%), Gaps = 17/412 (4%) Strand=Plus/Plus Query 117149 AACCCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAG 117208 ||||| || ||||||||||| || ||||| || || | |||||| | || ||| ||||| Sbjct 141045 AACCC-GTACCGATACCCTCCGCGCCATTAATGAGCAGCATCGGGATGATAGGCACGTAA 141103 Query 117209 AACTCAGGCTCCACCTGCAGACCGTCGTCCGTGA-CGTACTTGAGCACCGCATTGTCACT 117267 || | ||||| || | | ||| ||||| || | | || | | ||||| ||| Sbjct 141104 TACACGGGCTCAACGGGGAAACCATCGTC-GTCAGCATAGCGCAAGAGCGCATCATCATC 141162 Query 117268 CGGATCGAATATGTTCTTGGTCCACG-GTGCT-----AGGCGAGTGAAAATGTAACGAGA 117321 | ||||| | | | || ||||| || | ||||| |||||||||| Sbjct 141163 TTCAGGGAATA----CAAGA--CGCGTGTGCTTTTGAAGCAGCGTGAAGATGTAACGAGG 141216 Query 117322 GCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAG 117381 ||| || ||||| ||||| || || || ||||| || || || ||| | || || Sbjct 141217 GCTAGCGGCATCTTTGCCTCCCTGTAGTCGAGTACCAAACTGACCGGACGGATACAGCAG 141276 Query 117382 GTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCT 117441 |||||||||| |||||| |||| || |||| ||| |||||||| || | Sbjct 141277 CGGAAGGTTGTTGGAGCCCACGAAGTCCTGTGCCATGTTCACAATCGTCGAGTGTAACGA 141336 Query 117442 CGCCTCACCATGGTGATACGCCGTCTGCTC-CGCCACGTAGCCCGCCAGCTGAGCCACCT 117500 ||||| || ||||| || ||||| || || | || ||| || || ||||| ||||||| Sbjct 141337 AGCCTCGCCGTGGTGGTAGGCCGTGTGTTCACTGCA-GTAACCAGCAAGCTGTGCCACCT 141395 Query 117501 TCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTG 117552 ||| || ||| || || ||| || ||||| ||| |||||||||||| Sbjct 141396 TCACCTCGCTCGTTAGCTTGCGCTTCAGACAGGCGAAAAGCACCTTGCGCTG 141447 >seq952 Length=187182 Score = 138 bits (152), Expect = 1e-27 Identities = 252/369 (68%), Gaps = 0/369 (0%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || ||||| || || |||||||| || | ||| || | ||| ||| || | Sbjct 135639 CCCGTTCCGATACCGTCGCTGCCGTTGACAAGTACCATTGGGATAATCGGGATATACCAT 135698 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 |||||||| | ||||||||| || || ||||| | || ||||||| ||| Sbjct 135699 TCCGGCTCAATTGATTGACCGTCTTCGTCCAAGTATTCGAGCACATCATTGTCAAGAGGA 135758 Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCA 152055 || | ||||| ||||| | | ||| |||||| || || || | |||||| ||| Sbjct 135759 TCATAGATCCGGCGAGTGAGTTGTTCCAAGTTCGTGAAAATATAACGAGCGCTGGCTGCA 135818 Query 152056 TCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTG 152115 |||||||| || || ||||| || ||||| || ||| ||||||| || |||| Sbjct 135819 TCCTTGCCGCCCATCAAACGCGTACCGAACTGACCGATTGGCGACAGGAGGTGGATGTTG 135878 Query 152116 TTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCG 152175 ||| || || || | |||||||| || || || |||||||| |||| || ||| Sbjct 135879 TTGCTTCCGACAAAGTCCTGAGCCATGTTGACGATACAGCCCTGCAAACTCTGCTCGCCG 135938 Query 152176 TGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGTC 152235 || || ||||| | ||||| | | || || ||||| || |||||||||| |||| | Sbjct 135939 TGATGGTACGCGGAGTGCTCTGACACATAACCAGCCAATTGTGCCACCTTCAGCTCCGAC 135998 Query 152236 GTCAGGTTC 152244 ||||||| Sbjct 135999 TACAGGTTC 136007 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCC-ACCAGCAAGACGCGTACCGAATTG 117363 |||||||| ||||||| ||| || ||||||||||| ||| ||| |||||||||||| || Sbjct 135792 GTGAAAATATAACGAGCGCTGGCTGCATCCTTGCCGCCCATCAA-ACGCGTACCGAACTG 135850 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 || | ||| || ||||| | ||||||| || ||||||| ||||||| |||||| Sbjct 135851 ACCGATTGGCGACAGGAGGTGGATGTTGTTGCTTCCGACAAAGTCCTGAGCCATGTTGAC 135910 Query 117424 AATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCC 117483 || || || | ||| ||| || || || ||||| | ||||| | ||| || || Sbjct 135911 GATACAGCCCTGCAAACTCTGCTCGCCGTGATGGTACGCGGAGTGCTCTGACACATAACC 135970 Query 117484 CGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTC 117520 |||| || |||||||||| || ||| ||||||| Sbjct 135971 AGCCAATTGTGCCACCTTCAGCTCCGACTACAGGTTC 136007 >seq1029 Length=318196 Score = 125 bits (138), Expect = 8e-24 Identities = 333/502 (66%), Gaps = 5/502 (1%) Strand=Plus/Minus Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827 ||| || || | ||| |||| || ||||| || ||||||||| | || || ||||| Sbjct 189388 GCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCGTGAGGCCGCGCTT 189329 Query 74828 CTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAA 74887 ||| | ||| ||||| | ||||| || || |||||||||||| || || || || Sbjct 189328 CTTGAGCCAGAAGATCGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCCACGGTTGCGAA 189269 Query 74888 GGCGACAAGGCGTTGCGCGAACGGTG-CA-TCGGAAGTCAT-CCAAGTCTGAGCCCATTC 74944 | | | ||| | || | ||| | || ||| ||| ||| | | ||||| | Sbjct 189268 CGTCAGCACGCGCTCCGGGTACGACGACACTCGCGGGTCGCACCACTTGAGCGCCCAGTG 189209 Query 74945 AGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTC 75004 ||||| || || || | |||||||| || | | ||| ||||||| Sbjct 189208 CGCTTTCTTCTTCACACACGGAATCGTATCGATGGCACGCAGCAGGTGGTCCTTCTCCGT 189149 Query 75005 GGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTT 75064 | |||||||| | | ||||||| | || || ||| ||| || || || |||| | Sbjct 189148 CGCATCCTTGATGTACGTGTCAATGAGCAGCGAATACACCTCTGAGTGGATGTTCTCGAT 189089 Query 75065 GAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAAT 75123 | ||| |||| | ||||||| | || ||||| | | ||| || || || || | Sbjct 189088 GG-CGATCTGGAAACCGTAGAAGCAGCGGGCCTCCGGTACCTGCACTTCATTGCTGAAGT 189030 Query 75124 TCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTT 75183 ||||| | | ||||| | ||||||||||| ||| ||||| || ||||| || | Sbjct 189029 TCATGGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGAAGAAGGCCAGCACGTGCT 188970 Query 75184 TGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAAT 75243 |||| ||| ||||| | ||| || || || |||| ||||||||||| | ||| | Sbjct 188969 TGATGAAGAACCGCTCGTTGTCCGTCAGGTTCGCCCAGTCCTTCAGGTCGTGCACCAGGT 188910 Query 75244 CAATCTCCTCGACCGTCCAGAA 75265 | | ||||||| |||||||||| Sbjct 188909 CCAGCTCCTCGGCCGTCCAGAA 188888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547204946236800