Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq926 295 8e-75 seq147 132 5e-26 seq1151 127 2e-24 seq784 127 2e-24 seq1029 100 3e-16 seq952 87.8 2e-12 >seq926 Length=67561 Score = 295 bits (326), Expect = 8e-75 Identities = 950/1453 (65%), Gaps = 46/1453 (3%) Strand=Plus/Minus Query 80036 GCGTCCGCAGAT--AGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCAT 80093 |||||||| || |||||||||| |||||||| |||||||||||| |||| | |||||| Sbjct 32001 GCGTCCGCGCATGTAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCAT 31942 Query 80094 AGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACA 80153 || ||||||| | || |||| | ||| |||||| || |||||| ||| || Sbjct 31941 CGACGTGAGCTTGCTGATGGTCGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCA 31882 Query 80154 GATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATAC 80213 ||| | || || || || |||| || || | | | ||| || || ||||| || Sbjct 31881 AATGTACGCACCGCGGTCGGCCGACAGGTCCAGCACCGCCTTCTGCTTGATCTCCCACAC 31822 Query 80214 -----TGTACGATACACCTTACGAAGCTCCTCTGGAATGTCCA-GA--TTTTGCACACTG 80265 ||||| | | |||| || | | || || || || || || ||||| | Sbjct 31821 CGTCTTGTAC--TTCTCCTT--GACG-TGGTCCGGGATCGCCTTGACGTTCTGCACGGAG 31767 Query 80266 CCACCGTCCTTTACAATTTGATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGA 80325 || | ||| || | || || || || || | |||||||| || |||| | ||| Sbjct 31766 CCGCTGTCGTTCAAGATCTGGTTGCGCACGTCCGGCGTCCAGATGCCGAGCTCGATCAGC 31707 Query 80326 TCTTTCACAAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATAC 80385 || |||| |||| |||||| | || |||||||| || || || || ||| Sbjct 31706 TCCTTCATCAGGTACTTGTTGACGATCGTGAACTCTCCAGCCAGCACTCGGCGGTTGTAC 31647 Query 80386 AGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCC 80445 | ||| | ||||| ||||| | | |||||||||||| |||||||| |||||| ||| Sbjct 31646 ATGTTGGACGTGTACGGCTCGATAGACTCGTTGTTTCCAAGGATCTGGGCCGTGGAAGCC 31587 Query 80446 GTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC---- 80501 |||||||| ||| | |||| ||| || || || || |||||||| | | ||||| Sbjct 31586 GTCGGCATGGGGGCCACCAGCAGCGAGTTGCGGAGTCCGTGCTTGATCACGTCCTCCTTG 31527 Query 80502 -GCGCAAATCTGA-CCAAAAATCAACCCCAACGCTGTGAC--CCCACATGTCGTGCTGCA 80557 ||| | | | ||| | | | | | ||| ||||| ||||||||||| ||| | Sbjct 31526 AGCGTAGCCCAGTTCCACATACC--CGACGACGGGGTGACGCCCCACATGTCGAACTGGA 31469 Query 80558 AGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCA 80617 ||||||||| || || || ||| |||||||||||||||||| |||||| | Sbjct 31468 AGATGCCCTTGCTAGCGGGCGAGCCCTGGAACGTCTCGTACGGGCCGAGTTCCTTGGCGA 31409 Query 80618 GCTC---ACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCA 80674 ||| ||| |||||| ||| ||| || ||| ||| |||| | |||||| | Sbjct 31408 TCTCCATCGACGTCTCCAT---GGCGGCGAAGTAGATGGTCTCGAAGATGTTCTTGTTGA 31352 Query 80675 CACCGCGCGCC-TGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGG 80733 | || ||| | | | || ||||||| || ||| | || ||| |||| || ||| Sbjct 31351 GCTCCCGGGCCTTCTCGCTC-TCGAACGCGTAGTTCATGAGGATAAACGCGTCCGCGAGG 31293 Query 80734 CCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA-TCGCTCGGCCTCCGGAAT 80792 ||||| ||||| || |||| |||||||| ||| |||| || | || | ||||| | Sbjct 31292 CCCTGGACGCCAATACCGATGGGGCGGTGACGCATGTTGGACTTGCGC-GCCTCGATCAC 31234 Query 80793 TGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATC 80852 ||||| |||| |||||||| ||| | |||||| || || ||| || || || Sbjct 31233 GGGGTAGTAGTTGACGTCGATGACCTTGTTTAAGTTGCGGGTGACCACCTTCGTCACTTC 31174 Query 80853 ATGAAGTTTCTGAAAGTCG--AATTGGTTCCCCTTCACAAATGCCGGAAGGCTCAGGGAC 80910 || | ||||| ||| | || | || ||| ||| || || || || ||| Sbjct 31173 ATACAACTTCTGGTAGTTGAAAACTCCTT--CCTCCACGAACTTAGGCAGCGCCACAGAC 31116 Query 80911 GCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAA 80970 |||| |||||||| |||||||| || | || |||| | | || ||| || Sbjct 31115 GCCAAGTTGCACACAGCCACCTCGTCCGGCGACGTGTACTCCATCACCTCACAGCATAAG 31056 Query 80971 TTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTG 81030 || || || || || ||||| |||||||| |||||| |||| ||||||||| Sbjct 31055 TTGCTGGAGCGGATCGTGCCGAGGTTCTTCTGGTTCGACTTGCGGTTGGCCGCGTCCTTG 30996 Query 81031 TAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCG 81090 || |||| | || || ||||| | ||| | | | |||||| ||| | || Sbjct 30995 TACAACATAAAGGGCACTCCCGTCTCAATCTGGGCGTCCAATATGGCGAACCACAGCTGC 30936 Query 81091 CGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTCGTCG 81150 | || |||| | ||||||| || || | | | ||||| | || | ||| Sbjct 30935 TGGGCGTTGATCGTCTTGCGGGCGCGTCCCTCCGTCTCGTACTTTTCATAGAGGGCCTCG 30876 Query 81151 AACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAG 81210 || | | | || ||| ||| | ||| |||||||||||| || ||| Sbjct 30875 AATTCGTCGCCCCAGCACTCATAGAGTCCAGGGGCCTCGTTAGGGCAATAGAGACTCCAC 30816 Query 81211 TCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGG 81270 | | | | || || ||||||||| ||||| | ||| |||||| ||||||| Sbjct 30815 TTGCCATTGGCTTCCACCCTCTTCATGAACAGATCAGGCACCCAAAGGGCGTAGAACAGG 30756 Query 81271 TCGCGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGA 81328 ||||| |||||| | ||| | || ||||| || | || | || || | | Sbjct 30755 TCGCG--AGCGCGGTGCAACTCGTTGCCGTGGTTCTTACGGAGGTCCAAGAACTCGAACA 30698 Query 81329 TGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCCACCCT 81385 || || ||||| ||||||| ||| | ||||| || ||||| || | || |||| Sbjct 30697 CATCTGCGTGCCAAGGCTCCAAATAGATGGCGAAGGAGCCCTTACGCTTGCCTCCGCCCT 30638 Query 81386 GGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACT 81445 ||| ||||| || || || ||||||| || |||| ||| |||||||| |||| ||| Sbjct 30637 GGTCCACGTACCGCGCGGTGTCGTTAAACACCCGCAGCATGGGGATGATGCCATTGGACG 30578 Query 81446 GACCGTTCGTACC 81458 |||||||| || Sbjct 30577 AGCCGTTCGTGCC 30565 >seq147 Length=128699 Score = 132 bits (146), Expect = 5e-26 Identities = 145/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| |||||||| ||||| || || |||||||| || || || || || ||| | Sbjct 64988 ATCATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCG 64929 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || ||||||| ||| | ||| ||||| |||||||||||||| || || || ||| Sbjct 64928 TCCGACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCATCCCGCCTGAC 64869 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||||||||| || || || || ||||| |||||||| | || || || | ||||| Sbjct 64868 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTAC 64809 Query 27583 AATGTCCAAAAGG 27595 || |||| |||| Sbjct 64808 AACATCCAGAAGG 64796 >seq1151 Length=161202 Score = 127 bits (140), Expect = 2e-24 Identities = 181/253 (72%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 31999 TCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTG 32058 || |||||||||||| | | |||||| || ||| || || |||| || |||||||| Sbjct 141450 TCGCAGCGCAAGGTGCTTTTCGCCTGTCTGAAGCGCAAGCTAACGAGCGAGGTGAAGGTG 141391 Query 32059 GCGCAGCTGTCGGGCTACGTGGCAGAG--CAAACGGCCTATCACCACGGCGAGGCGTCGC 32116 || ||||| | || ||| |||| | || |||||||| |||||||||||||| ||| Sbjct 141390 GCACAGCTTGCTGGTTACT--GCAGTGAACACACGGCCTACCACCACGGCGAGGCTTCGT 141333 Query 32117 TCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTAC 32176 | || || ||||| ||| | || ||| |||| || || | || ||||| | | Sbjct 141332 TACACTCGACGATTGTGAACATGGCACAGGACTTCGTGGGCTCCAACAACCTTCCGCTGC 141273 Query 32177 TCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCC 32236 | | || || || |||||||| || || || || ||||| ||||| || ||| | | Sbjct 141272 TGTATCCGTCCGGTCAGTTTGGTACTCGACTACAGGGAGGCAAAGATGCCGCTAGCCCTC 141213 Query 32237 GTTACATCTTCAC 32249 ||||||||||||| Sbjct 141212 GTTACATCTTCAC 141200 >seq784 Length=83642 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| || |||||||| || || || || || ||| | Sbjct 19012 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 18953 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || || | || | ||| || || |||||||||||||| || || || |||||| Sbjct 18952 GACTCGATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 18893 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || || ||||| ||||| || ||||| | ||| || || ||| ||||| || Sbjct 18892 CAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGC-GACTACAA 18834 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || ||||| || || || || || || |||| ||||| |||||| Sbjct 18833 CATTCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGCCTTCGTGGTGGA 18785 >seq1029 Length=318196 Score = 100 bits (110), Expect = 3e-16 Identities = 346/534 (65%), Gaps = 7/534 (1%) Strand=Plus/Plus Query 64319 TGTGGGAGCTTTACAAGAAAGCCATCGCAAGTTTCTGGACGGTCGAGGAGGTTGATCTCG 64378 ||||| || | ||||||||||| || |||||||||| ||||||| | || || | Sbjct 188856 TGTGGCAGATGTACAAGAAAGCGGAGGCCTCGTTCTGGACGGCCGAGGAGCTGGACCTGG 188915 Query 64379 CCAAGGATCTCAGCGACTGGGAAAACCTAAACTCACAG-GAACAGCACTTCATCAAGTTG 64437 | || || | ||||||| ||||| | | ||| || | | |||||||||| Sbjct 188916 TGCACGACCTGAAGGACTGGGCGAACCTGA-CGGACAACGAGCGGTTCTTCATCAAGCAC 188974 Query 64438 GTCCTAGCATTCTTCGCATCAAGTGACGGAATTGTGTTTGAGAATTTGGACCTAAATTTT 64497 || || || |||||||| | || ||||| || ||| ||||| ||| | | || || Sbjct 188975 GTGCTGGCCTTCTTCGCTGCCAGCGACGGCATCGTGAACGAGAACCTGGCCATGAACTTC 189034 Query 64498 ACAAAGGATGTTCAGATCCCAGAGGCGCGGTCATTCTATGCGTATCAGGGATTTAACGAA 64557 | || || || ||| | || ||||| || | ||||| | | ||| | ||| Sbjct 189035 AGCAATGAAGTGCAGGTACCGGAGGCCCGCTGCTTCTACGGTTTCCAGATCGCCATCGAG 189094 Query 64558 AGTATTCATGGCGAGACGTATTCGCTCATGATTGACAAGTTTGTTCGGGATCCTGTCGAG 64617 | || || ||| ||||||||| | ||||||| || | |||| | ||| Sbjct 189095 AACATCCACTCAGAGGTGTATTCGCTGCTCATTGACACGTACATCAAGGATGCGACGGAG 189154 Query 64618 AAGGATGGACTGTTCAGGGCTATAGAGACTGTACCCGCTGTTACTAAAAAGGCTGAATGG 64677 ||||| ||| | | || || || || | || ||| | || || || | ||| Sbjct 189155 AAGGACCACCTGCTGCGTGCCATCGATACGATTCCGTGTGTGAAGAAGAAAGCGCACTGG 189214 Query 64678 GCCATCCGGTGGATGAATC---GTGGGTCGTCGTTTGGTCAGCGTCTCGCAG-CTTTTGC 64733 || || |||| | | | | |||||||| |||| | || | | || || Sbjct 189215 GCGCTCAAGTGGTGCGACCCGCGAGTGTCGTCGTACCCGGAGCGCGT-GCTGACGTTCGC 189273 Query 64734 CTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCG 64793 ||||| || || ||||| || || || ||||| || || |||||||| || ||||| Sbjct 189274 AACCGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGCTCGATCTTCTGGCTCAAGAAGCG 189333 Query 64794 GGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGG 64847 ||||| | ||| || ||| || ||||||||||||||| || |||||||| Sbjct 189334 CGGCCTCACGCCTGGCCTGAGCTTCTCGAACGAGCTGATCAGCCGTGACGAGGG 189387 >seq952 Length=187182 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 32034 GAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGC 32093 |||||||| | || |||||||||| || || | || || ||| ||||||| | || Sbjct 136007 GAACCTGTAGTCGGAGCTGAAGGTGGCACAATTGGCTGGTTATGTGTCAGAGCACTCCGC 135948 Query 32094 CTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGT 32153 || || ||||||||| | | |||||| || |||||| | |||||| ||||||| Sbjct 135947 GTACCATCACGGCGAGCAGAGTTTGCAGGGCTGTATCGTCAACATGGCTCAGGACTTTGT 135888 Query 32154 CGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGG 32213 ||| || ||| | || | || |||| || ||||| || || || | || Sbjct 135887 CGGAAGCAACAACATCCACCTCCTGTCGCCAATCGGTCAGTTCGGTACGCGTTTGATGGG 135828 Query 32214 TGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC 32249 ||||||||||| || ||| | ||||| || ||||| Sbjct 135827 CGGCAAGGATGCAGCCAGCGCTCGTTATATTTTCAC 135792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570298879729920