Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq191 192 5e-44 seq1068 105 5e-18 >seq191 Length=126180 Score = 192 bits (212), Expect = 5e-44 Identities = 408/603 (68%), Gaps = 12/603 (2%) Strand=Plus/Plus Query 29864 AGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGG 29923 ||||| ||| ||||| || || | | || || ||||| || || || | |||| Sbjct 33236 AGCTGCTTCTGGAGCGGCTCGACATGGTTAAGATACACGTGGGCATCACCAATAACGTGG 33295 Query 29924 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 29983 |||||||| || || | || || | || || || |||| ||| || | | |||| Sbjct 33296 ACAAACTCGCCAGGCTTCAGTCCACTCACCTGTGCTATCAGTCGCGTAAGCAACGCGTAG 33355 Query 29984 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 30043 ||||||||||| || || || || || |||||||| |||| | |||||| | ||| || Sbjct 33356 CTGGCGATGTTGAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAG 33415 Query 30044 GAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATG 30103 || | ||| |||||| |||||| ||||| || | ||| ||||| || || ||||| Sbjct 33416 GACAACTCGCCGTCGGCCACGTAGAACTGGCAGAACATGTGACACGGCGGGAGCGCCAT- 33474 Query 30104 AGGCCCA---AG-TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCT-TCTGGGT 30158 | || || || || ||||| || ||| | ||| || | ||| || | | Sbjct 33475 ---CTCATTGAGATCCGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTCGGATT 33531 Query 30159 TGTTC-CTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCT 30217 ||| | | | | ||| | | | ||||| ||||| ||| || | |||||| Sbjct 33532 TGTGCGCAGCTT--GTCAATCACCTCAGCGAGCTGGTCCACGCCCTGACCAGTGTAGTCG 33589 Query 30218 GCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCC 30277 || |||||||||||||| |||||| ||||| | ||||||||| ||||| |||||||| Sbjct 33590 GCGTGCATGTCCGTGTACTTTGCTCCAAAATGACGCCACTGGAAGCCGTAGACCGGTCCG 33649 Query 30278 AGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTG 30337 ||||| || |||||| || | || | |||||| | | || | || || ||| Sbjct 33650 AGGTCGCCAACTTCCCGCGACTGCAGTCCTCGACTGTCCAGATACTCCCGCGATCCATTG 33709 Query 30338 GCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACG 30397 |||||||||| | | ||||||| ||| | | | ||| || |||| | Sbjct 33710 CCGTCCCAGATGTGGATATCCTTCTCCTGCAGCGTGTGCGCACTCGTGTCGCCACTGATG 33769 Query 30398 AACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGA 30457 |||||||||||||||||| | ||| | ||| ||||| | |||||||||||| | ||| Sbjct 33770 AACCACAGCAGCTCCTCCGCCACGCCGCGCCAGAAGACGCGCTTGGTCGTGAGCAAGGGG 33829 Query 30458 AAC 30460 ||| Sbjct 33830 AAC 33832 >seq1068 Length=45886 Score = 105 bits (116), Expect = 5e-18 Identities = 207/306 (68%), Gaps = 0/306 (0%) Strand=Plus/Minus Query 49034 GTCCACCTCCAGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTC 49093 |||||||||| | | || ||||| | ||||||| | |||||| || | | ||| Sbjct 20216 GTCCACCTCCTGGATCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTC 20157 Query 49094 GCCCCTCTCGACCCGAAAGGGGTCGCACCCAAAGTTAAACAGTATGACGCCGAGGTTGCC 49153 || | || ||| | ||| ||| | | ||| ||||| || ||||| | |||||| Sbjct 20156 TCCGCGCTTGACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCC 20097 Query 49154 CCTGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTTCAGGGCCAGGCC 49213 | |||||||| ||| | ||| ||||| || ||| || || || || || || || || Sbjct 20096 GCGGTAGTCGGCGTCGATCACGCCGGCGCCCGTGTCGATGAACTTCTTGAGCGCGAGTCC 20037 Query 49214 GGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTCACGGCCAGGTCCGTCTT 49273 ||| | || ||||| | ||||| ||| ||| | | | ||||||||||||| Sbjct 20036 GGAGCGCGGCGCCACGCGCGCGTAGCAGCCGTCGGGTACGGCGATGACCAGGTCCGTCTT 19977 Query 49274 TACCAGGGCCCTGTCGAAGGAGGGGACCACGACCGGGTGAGCGGCCGCCAGGTCGTAACC 49333 || ||| || || || | ||||| |||| | || ||| |||| |||||| ||| Sbjct 19976 GACGAGGCCCTTGCCGCCCGCGGGGATCACGGCGTCGTAAGCAGCCGACAGGTCCAGACC 19917 Query 49334 CGCGGC 49339 |||||| Sbjct 19916 CGCGGC 19911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406302397716672