Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_029093.1 Length=75796 Score E Sequences producing significant alignments: (Bits) Value seq787 158 6e-34 >seq787 Length=83116 Score = 158 bits (174), Expect = 6e-34 Identities = 335/498 (67%), Gaps = 9/498 (2%) Strand=Plus/Minus Query 65906 CGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGA 65965 ||||| ||||||||| || ||| || | ||| | | ||||||||||| || ||||| || Sbjct 18732 CGCCTTCATCGACGCAGAACACGCCATTGACGCCCACTACGCCAAGGCTCTGGGTGTCGA 18673 Query 65966 CCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGA 66025 | | ||| || || ||||||||| | ||||| | || |||||||||| || Sbjct 18672 CATTGACGCGCTGTACGTCTCGCAGCCGGACTCGGGCGAAGAAGCTCTGGAGATCGCCGA 18613 Query 66026 CCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGT 66085 | ||| ||| ||| || | | || | |||| || | ||| |||||| || ||||| Sbjct 18612 CACGCTCATCAGGTCGGGAGCGGTGGACCTCGTGGTGCTGGACAGTGTGGCAGCGCTGGT 18553 Query 66086 GCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCT 66145 |||||| || ||||| || || || || || ||| || | | ||||| ||||| || Sbjct 18552 GCCGCGTGCGGAGCTGGAGGGTGAAATGGGAGACCAGCAGATTGCACTGCAGGCGCGACT 18493 Query 66146 CATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCTCCAGCACCAA---CACGCTGAC 66202 |||| ||||| |||| |||||||| || | | |||| |||| ||| | | Sbjct 18492 CATGAGTCAGGCGCTGCGAAAGCTCACGGGGTCGCTGTCCAAGTCCAACTGCACCATTA- 18434 Query 66203 GCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAACGAGAC 66262 ||| | |||||| | ||| ||||| | || | | | || ||| | ||| Sbjct 18433 --TCTTCCTGAACCAGATTCGCCAGAAGGTGGGAATCAT---CTTCGGATCTCCTGAGGT 18379 Query 66263 CACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAGTCCGCATGGATGTCCGTCGCAT 66322 || |||| || | ||| || | | |||||| || || | |||| | ||||||| Sbjct 18378 TACGTCGGGTGGAACAGCTCTGCGTTACTACGCGTCTGTAAGGCTGGACATTCGTCGCAA 18319 Query 66323 CGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAA 66382 | || ||||| ||||| ||| |||||||||| || ||||||||| | ||| Sbjct 18318 GACGGCCATCAAGGAGGGCGACCAGGTTGTCGGCAACGAAACGGTGGTGAAGGTGGCCAA 18259 Query 66383 GAACAAGCTGGCCCCGCC 66400 |||||| || ||| |||| Sbjct 18258 GAACAAACTTGCCTCGCC 18241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242417625490832