Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq191 242 3e-59 >seq191 Length=126180 Score = 242 bits (268), Expect = 3e-59 Identities = 477/696 (69%), Gaps = 11/696 (2%) Strand=Plus/Plus Query 6506 GGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAG 6565 |||||||| || ||| ||| ||||| || ||||| |||||| ||||| || || Sbjct 33212 GGGAACGGGCGCGGCGATCGAGTAAGCTGCTTCTGGAGCGGCTCGACATGGTTAAGATAC 33271 Query 6566 ATATGCGCATCCCCCA--ACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAG 6623 | || ||||| || | |||| | || | ||| ||||| || || || || | Sbjct 33272 ACGTGGGCATCACCAATAACGT--GGACAAACTCGCCAGGCTTCAGTCCACTCACCTGTG 33329 Query 6624 CGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGT 6683 | |||| ||| |||| ||||| || || |||||||||||||| || | ||||||| Sbjct 33330 CTATCAGTCGCGTAAGCAACGCGTAGCTGGCGATGTTGAACGGCACGCCAAGTCCCATGT 33389 Query 6684 CTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGA 6743 | |||| || || || | ||||||||||| ||| || | || |||||||| ||||||| Sbjct 33390 CGGCCGAGCGCTGGTACATCTGGCAGGACAACTCGCCGTCGGCCACGTAGAACTGGCAGA 33449 Query 6744 GGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCA 6803 |||| ||||| |||||||||||| | ||||||| ||| |||||||| ||| || Sbjct 33450 ACATGTGACACGGCGGGAGCGCCATCTCATTGAGATCCGCCGGATTCCACGCCGACAGCA 33509 Query 6804 CGATCCTTCTGTC-ATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC-AGCTGGTC 6861 |||||| | ||| || | || || || |||| ||||| | | || |||||||| Sbjct 33510 CGATCCGACGGTCGGTCGGATTTGTGC-GCAGCTTGTCAATCACCT-CAGCGAGCTGGTC 33567 Query 6862 CGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCA 6921 | | ||||| || | ||||| || | | || |||| || ||||| || | ||| Sbjct 33568 CACGCCCTGACCAGTGTAGTCGGCGTGCATGTCCGTGTACTTTGCTCCAAAATGACGCCA 33627 Query 6922 CTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTC 6981 |||||| ||||||||||| || | |||||| | ||||| || | | || || |||| Sbjct 33628 CTGGAAGCCGTAGACCGGTCCGAGGTCGCCAACTTCCCGCGACTGCAGTCCTCGACTGTC 33687 Query 6982 CAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTT 7041 |||| | || || || || | |||||||||| | | || | ||| | Sbjct 33688 CAGATACTCCCGCGATCCATTGCCGTCCCAGATGTGGATATCCTTCTCCTGCAGCGTGTG 33747 Query 7042 GGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACAC 7101 | ||||| | || || | |||||||||||||||||| ||||||| |||| | || Sbjct 33748 CGCACTCGTGTCGCCACTGATGAACCACAGCAGCTCCTCCGCCACGCCGCGCCAGAAGAC 33807 Query 7102 ACGTTTCGTCGTCAGC-AGCGGA--AATTCGCCCCGAAGGTTGTATCGGGCCTGTGTGCC 7158 || || ||||| ||| || ||| | | ||||| || || | || ||| | || Sbjct 33808 GCGCTTGGTCGTGAGCAAGGGGAACACGTTGCCCCTCAGACTGAAGCGCATCTGCGCTCC 33867 Query 7159 GAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCC 7194 ||| || || || ||||| || || || || || || Sbjct 33868 GAAGACCGACAGCGTCCCTGTTCCCGTGCGATCTCC 33903 Score = 242 bits (268), Expect = 3e-59 Identities = 477/696 (69%), Gaps = 11/696 (2%) Strand=Plus/Minus Query 34151 GGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTT 34210 || || || || || || ||||| || || || ||||| | ||| || | || || Sbjct 33903 GGAGATCGCACGGGAACAGGGACGCTGTCGGTCTTCGGAGCGCAGATGCGCTTCAGTCTG 33844 Query 34211 CGGGGCGAATT--TCCGCT-GCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAG 34267 ||||| | | ||| || ||| ||||| || || || | |||| ||||||| ||| Sbjct 33843 AGGGGCAACGTGTTCCCCTTGCTCACGACCAAGCGCGTCTTCTGGCGCGGCGTGGCGGAG 33784 Query 34268 GAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTG 34327 ||||||||||||||| | || || | ||||| | | ||| | || | Sbjct 33783 GAGCTGCTGTGGTTCATCAGTGGCGACACGAGTGCGCACACGCTGCAGGAGAAGGATATC 33724 Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGG 34387 | |||||||||| | || || || || | |||||||| || || | | || ||| Sbjct 33723 CACATCTGGGACGGCAATGGATCGCGGGAGTATCTGGACAGTCGAGGACTGCAGTCGCGG 33664 Query 34388 GAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTAT 34447 || | |||||| | || ||||||||||| ||||||||| | || ||||| || |||| Sbjct 33663 GAAGTTGGCGACCTCGGACCGGTCTACGGCTTCCAGTGGCGTCATTTTGGAGCAAAGTAC 33604 Query 34448 CGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACGTGATCGA 34506 || | | || ||||| | || ||||| | ||||||||| || | | ||||| || Sbjct 33603 ACGGACATGCACGCCGACTACACTGGTCAGGGCGTGGACCAGCTCGCTG-AGGTGATTGA 33545 Query 34507 CACCTTGAAGCGGAACCCTGAT-GACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGG 34565 || || || || | || ||| | |||||||| ||| |||||||| ||| || Sbjct 33544 CAAGCTGC-GCACAAATCCGACCGACCGTCGGATCGTGCTGTCGGCGTGGAATCCGGCGG 33486 Query 34566 ATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATG 34625 ||||| | |||||||||||| ||||| |||| ||||||| |||||||| || | | Sbjct 33485 ATCTCAATGAGATGGCGCTCCCGCCGTGTCACATGTTCTGCCAGTTCTACGTGGCCGACG 33426 Query 34626 GGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCA 34685 | ||| ||||||||||| | || || || |||| |||||||| | || |||||||||| Sbjct 33425 GCGAGTTGTCCTGCCAGATGTACCAGCGCTCGGCCGACATGGGACTTGGCGTGCCGTTCA 33366 Query 34686 ACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTG 34745 |||| || || ||||| |||| ||| |||| || || || || || |||| Sbjct 33365 ACATCGCCAGCTACGCGTTGCTTACGCGACTGATAGCACAGGTGAGTGGACTGAAGCCTG 33306 Query 34746 GGGAGCTGGTGCATACGT--TGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCT 34803 | ||| | || | |||| | || ||||| || | || || ||||| |||||| ||| Sbjct 33305 GCGAGTTTGTCC--ACGTTATTGGTGATGCCCACGTGTATCTTAACCATGTCGAGCCGCT 33248 Query 34804 CCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCC 34839 || || ||||| ||| ||| || |||||||| Sbjct 33247 CCAGAAGCAGCTTACTCGATCGCCGCGCCCGTTCCC 33212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448253345099520