Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq191 143 2e-29 seq1068 109 4e-19 >seq191 Length=126180 Score = 143 bits (158), Expect = 2e-29 Identities = 384/590 (65%), Gaps = 10/590 (2%) Strand=Plus/Plus Query 29648 AGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCC 29707 ||||| || || |||| ||| || ||||| ||||| || | |||||||||||| || Sbjct 33248 AGCGGCTCGACATGGTTAAGATACACGTGGGCATCACCAATAACGTGGACAAACTCGCCA 33307 Query 29708 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29767 || | || || | || || || |||| ||| || | | ||||||||||||||| Sbjct 33308 GGCTTCAGTCCACTCACCTGTGCTATCAGTCGCGTAAGCAACGCGTAGCTGGCGATGTTG 33367 Query 29768 AAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCG 29827 || ||||| || || |||||||| | || | |||||| | |||||| || | ||| ||| Sbjct 33368 AACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAGGACAACTCGCCG 33427 Query 29828 TCGCTCACGTAAAACTGAC---ACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAG 29884 ||| |||||| ||||| | ||||| || ||||| || || ||||| | | Sbjct 33428 TCGGCCACGTAGAACTGGCAGAACATG---TGACACGGCGGGAGCGCCATCTCATTGAGA 33484 Query 29885 TCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTC-TTCTGGGTTGTTC-CTGATGA 29942 || || ||||| || ||| | ||| || | ||| || | |||| | | | | Sbjct 33485 TCCGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTCGGATTTGTGCGCAGCT-- 33542 Query 29943 GGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNN 30002 ||| | | | ||||| ||||| ||| || | |||||| | Sbjct 33543 TGTCAATCACCTCAGCGAGCTGGTCCACGCCCTGACCAGTGTAGTCGGCGTGCATGTCCG 33602 Query 30003 NNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30062 | ||||| | ||||||||| ||||| |||||||| ||||| || ||| Sbjct 33603 TGTACTTTGCTCCAAAATGACGCCACTGGAAGCCGTAGACCGGTCCGAGGTCGCCAACTT 33662 Query 30063 CCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 30122 ||| || | || | |||||| | | || | || || ||| |||||||||| | Sbjct 33663 CCCGCGACTGCAGTCCTCGACTGTCCAGATACTCCCGCGATCCATTGCCGTCCCAGATGT 33722 Query 30123 TTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCT 30182 | ||||||| ||| | | | ||| || |||| |||||||||||||| Sbjct 33723 GGATATCCTTCTCCTGCAGCGTGTGCGCACTCGTGTCGCCACTGATGAACCACAGCAGCT 33782 Query 30183 CCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC 30232 ||||| | ||| | ||| ||||| | |||||||||||| | ||| ||| Sbjct 33783 CCTCCGCCACGCCGCGCCAGAAGACGCGCTTGGTCGTGAGCAAGGGGAAC 33832 >seq1068 Length=45886 Score = 109 bits (120), Expect = 4e-19 Identities = 196/284 (69%), Gaps = 2/284 (1%) Strand=Plus/Minus Query 49862 ACTCGTATCT-CTCGAGCACGAGCTGGGCTATCCTGTCGCCCCTCTCGACCCGAAAGGCA 49920 ||||| |||| |||||| | |||||| || | | ||| || | || ||| | ||| | Sbjct 20193 ACTCG-ATCTTCTCGAGGATGAGCTGCGCCACGCGGTCTCCGCGCTTGACGGGGAAGTCC 20135 Query 49921 TCACACCCAAAGTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACC 49980 || | | ||| ||||| || ||||| | |||||| | |||||||| ||| | ||| Sbjct 20134 TCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCCGCGGTAGTCGGCGTCGATCACG 20075 Query 49981 CCGGCACCGACGTCTATAAACTTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCG 50040 ||||| || ||| || ||||| || || || || ||||| | || ||||| | || Sbjct 20074 CCGGCGCCCGTGTCGATGAACTTCTTGAGCGCGAGTCCGGAGCGCGGCGCCACGCGCGCG 20015 Query 50041 TAGAGGCCCGGGGGCATCTTCACGGCAAGGTCCGTCTTTACCAGGGCCCTGCCGAAGGAG 50100 ||| ||| ||| | | | | ||||||||||| || ||| || ||||| | | Sbjct 20014 TAGCAGCCGTCGGGTACGGCGATGACCAGGTCCGTCTTGACGAGGCCCTTGCCGCCCGCG 19955 Query 50101 GGGACCACGACGGGGTGAGCGGCCGCCAGGTCGTAACCGGCGGC 50144 |||| |||| || || ||| |||| |||||| ||| ||||| Sbjct 19954 GGGATCACGGCGTCGTAAGCAGCCGACAGGTCCAGACCCGCGGC 19911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406155200615776