Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq191 179 3e-40 seq1068 111 1e-19 >seq191 Length=126180 Score = 179 bits (198), Expect = 3e-40 Identities = 405/603 (67%), Gaps = 12/603 (2%) Strand=Plus/Plus Query 27130 AGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGG 27189 ||||| ||| ||||| || || || | || || ||||| || || || | |||| Sbjct 33236 AGCTGCTTCTGGAGCGGCTCGACATGGTTAAGATACACGTGGGCATCACCAATAACGTGG 33295 Query 27190 ACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAG 27249 |||||||| || || | || || | || || || |||| ||| || | | |||| Sbjct 33296 ACAAACTCGCCAGGCTTCAGTCCACTCACCTGTGCTATCAGTCGCGTAAGCAACGCGTAG 33355 Query 27250 CTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACAC 27309 ||||||||||| || || || || || |||||||| |||| | |||||| | ||| || Sbjct 33356 CTGGCGATGTTGAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAG 33415 Query 27310 GAGAGCTCTCCATCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATG 27369 || | ||| || ||| ||||| ||||| || | ||| ||||| || || ||||| Sbjct 33416 GACAACTCGCCGTCGGCCACGTAGAACTGGCAGAACATGTGACACGGCGGGAGCGCCAT- 33474 Query 27370 AGGCCCA---AG-TCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCT-TCTGGGT 27424 | || || || || ||||| || ||| | ||| || | ||| || | | Sbjct 33475 ---CTCATTGAGATCCGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTCGGATT 33531 Query 27425 TGTTC-CTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCT 27483 ||| | | | | ||| | | | ||||| ||||| ||| || | |||||| Sbjct 33532 TGTGCGCAGCTT--GTCAATCACCTCAGCGAGCTGGTCCACGCCCTGACCAGTGTAGTCG 33589 Query 27484 ACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCC 27543 | |||||||||||||| |||||| ||||| | ||| ||||| ||||| |||||||| Sbjct 33590 GCGTGCATGTCCGTGTACTTTGCTCCAAAATGACGCCACTGGAAGCCGTAGACCGGTCCG 33649 Query 27544 AGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTG 27603 ||||| || |||||| || | || | |||||| | | || | || || ||| Sbjct 33650 AGGTCGCCAACTTCCCGCGACTGCAGTCCTCGACTGTCCAGATACTCCCGCGATCCATTG 33709 Query 27604 GCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACG 27663 |||||||||| | | ||||||| ||| | | | ||| || |||| | Sbjct 33710 CCGTCCCAGATGTGGATATCCTTCTCCTGCAGCGTGTGCGCACTCGTGTCGCCACTGATG 33769 Query 27664 AACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGA 27723 |||||||||||||||||| | ||| | ||| ||||| | |||||||||||| | ||| Sbjct 33770 AACCACAGCAGCTCCTCCGCCACGCCGCGCCAGAAGACGCGCTTGGTCGTGAGCAAGGGG 33829 Query 27724 AAC 27726 ||| Sbjct 33830 AAC 33832 >seq1068 Length=45886 Score = 111 bits (122), Expect = 1e-19 Identities = 208/306 (68%), Gaps = 0/306 (0%) Strand=Plus/Minus Query 44826 GTCCACCTCCAGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTC 44885 |||||||||| | | || ||||| | ||||||| | |||||| || | | ||| Sbjct 20216 GTCCACCTCCTGGATCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTC 20157 Query 44886 GCCCCTCTTGACCCGAAAGGGGTTGCACCCAAAGTTAAACAGTATGACGCCGAGGTTGCC 44945 || | |||||| | ||| | | | | ||| ||||| || ||||| | |||||| Sbjct 20156 TCCGCGCTTGACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCC 20097 Query 44946 CCTGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTTCAGGGCCAGGCC 45005 | |||||||| ||| | ||| ||||| || ||| || || || || || || || || Sbjct 20096 GCGGTAGTCGGCGTCGATCACGCCGGCGCCCGTGTCGATGAACTTCTTGAGCGCGAGTCC 20037 Query 45006 GGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTCACGACCAGGTCCGTCTT 45065 ||| | || ||||| | ||||| ||| ||| | | ||||||||||||||| Sbjct 20036 GGAGCGCGGCGCCACGCGCGCGTAGCAGCCGTCGGGTACGGCGATGACCAGGTCCGTCTT 19977 Query 45066 TACCAGGGCCCTGCCTAAGGAGGGGACCACGACCGGGTGAGCGGCCGCCAGGTCGTAACC 45125 || ||| || |||| | ||||| |||| | || ||| |||| |||||| ||| Sbjct 19976 GACGAGGCCCTTGCCGCCCGCGGGGATCACGGCGTCGTAAGCAGCCGACAGGTCCAGACC 19917 Query 45126 CGCGGC 45131 |||||| Sbjct 19916 CGCGGC 19911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369499922555696