Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F000686205.3_202014-12- 01] 1,616 sequences; 73,680,304 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq784 170 4e-37 seq147 140 7e-28 seq868 113 9e-20 seq1329 111 3e-19 seq1151 104 5e-17 >seq784 Length=83642 Score = 170 bits (188), Expect = 4e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| ||||| || ||||| || | ||| || || || ||||||||||| Sbjct 18786 CCACCACGAAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 18845 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || || || ||||||| ||| || |||||| ||| Sbjct 18846 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 18905 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| ||| || ||| | ||||| | |||||| | || || Sbjct 18906 ATGCCCTCCTTGTCCTGGATCTTCTGC-TTGACGTTGTCGATCGAGTCCGACGGCTCCAC 18964 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| ||||||| ||||| ||||| |||||||| Sbjct 18965 GTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 19012 >seq147 Length=128699 Score = 140 bits (154), Expect = 7e-28 Identities = 146/189 (77%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | ||||||||||| ||||| || || || ||||| |||||| Sbjct 64798 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 64857 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATC 283030 | ||| || |||||| ||| || ||||||||||| ||||| || ||| || || | || Sbjct 64858 AGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGC-TTGACATTGTC 64916 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||| || | || || || || ||||| ||||| ||||||| ||||| || || Sbjct 64917 AATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAA 64976 Query 283091 TATCTGCAT 283099 |||||||| Sbjct 64977 GATCTGCAT 64985 >seq868 Length=80962 Score = 113 bits (124), Expect = 9e-20 Identities = 94/115 (82%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| ||||| ||||| || | |||||| || || |||||||||||||| | Sbjct 33826 ACCACCACGCAGACGAAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGA 33885 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 ||| |||||||| ||||| || || || ||||| ||||||| || || |||||| Sbjct 33886 AAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCA 33940 >seq1329 Length=147112 Score = 111 bits (122), Expect = 3e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||| |||||||| ||||||| ||||||||||| |||| |||| ||| || Sbjct 131614 TCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTCTCGTCGAGG 131555 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 || ||| |||||||||||||||||||| |||||||| || | |||||| || ||| Sbjct 131554 TGCGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCGAAACGCATGGAAGGGTGC 131495 Query 316282 TTCCAAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTT 316341 ||||| || |||| | || | |||| || || || |||| || || || || Sbjct 131494 TTCCACACCTGACCGCTCGTCGGCTCCACCTCACCCGTCAGCATCTTGATCAGCGTCGAC 131435 Query 316342 TTTCCCGCGCCGTT 316355 || || || ||||| Sbjct 131434 TTACCGGCACCGTT 131421 Score = 93.3 bits (102), Expect = 9e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 315651 GTGACTAATCACCACCACCCCACCTCCGAAATTCTTAAGCGCCTCTGCCATGGCACCGAG 315710 |||| |||||| ||||| ||||| ||| | ||| | ||| || | |||||| || Sbjct 132134 GTGAGTAATCATGACCACACCACCGTTGAAGTCCTTGATGGCCGAAGCAAGGGCACCAAG 132075 Query 315711 ACTCTCGCGGTCCACAAAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTGCCA 315770 |||||||| | |||| |||||||||||||| || | || ||| || | |||| Sbjct 132074 CGAGTCGCGGTCAAGGTAGTTCGTCGGCTCATCAAGCACAAGGATGTGCGGGTTCAGCCA 132015 Query 315771 TAGAGCGGCGCCGATAACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCGAGA 315830 | |||||| ||| |||| ||| | || || ||||| ||||| ||||| ||||| || Sbjct 132014 CATAGCGGCAGCGAGCACGACCTTCACCTTCTGACCACCGGACAGACCACGCATGCGCGA 131955 Query 315831 ATGAGT 315836 || || Sbjct 131954 GTGGGT 131949 >seq1151 Length=161202 Score = 104 bits (114), Expect = 5e-17 Identities = 291/444 (66%), Gaps = 12/444 (3%) Strand=Plus/Plus Query 273620 AGACCAACCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGGGAC 273679 ||||||||| || || ||||| | ||||| | || | ||||||| || || || Sbjct 141040 AGACCAACCCGTACCGATACCCTCCGCGCCATTAATGAGCAGCATCGGGATGATAGGCAC 141099 Query 273680 ATAATATTCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCATCATC 273739 ||||| ||||||||| ||||||||||| | || ||| | |||||||| Sbjct 141100 GTAATACACGGGCTCAACGGGGAAACCATCGTCGTCAGCATAGCGCAAGAGCGCATCATC 141159 Query 273740 CGTATCAACGAAAACCTTTCGCGTCTGAGGATTCAGTTTCGTGAAAATGTACCTGGCACT 273799 ||| ||| || ||||| || | || |||||| ||||| | | || Sbjct 141160 ATCTTCAGGGAATACAAGACGCGTGTGCTTTTGAAGCAGCGTGAAGATGTAACGAGGGCT 141219 Query 273800 CGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTCGGG---CAGTAGCCA 273856 || || ||||| || || || | | |||||||||||| || ||| ||| Sbjct 141220 AGCGGCATCTTTGCCTCCCTGTAGTCGAGTACCAAACTGACCGGACGGATACAGCAGCGG 141279 Query 273857 GTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGGA 273916 | ||||||| || ||| | ||||| ||||| ||||| || ||| || | || Sbjct 141280 A---AGGTTGTTGGAGCCCACGAAGTCCTGTGCCATGTTCACAATCGTCGAGTGTAACGA 141336 Query 273917 TACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCACTGAACTGAGCAACCTT 273976 ||||||||||||| ||||| ||||||| | |||||| | ||| || ||||| Sbjct 141337 AGCCTCGCCGTGGTGGTAGGCCGTGTGTTCACTGCAGTAACCAGCAAGCTGTGCCACCTT 141396 Query 273977 CACATCGCTCGTCAAGTTTCGCTTGA---ATGCGGAATACAACACCTTCCGCTGCGAGGG 274033 ||| |||||||| | || ||||| | | ||| || | |||||| ||||||||| Sbjct 141397 CACCTCGCTCGTTAGCTTGCGCTTCAGACAGGCGAAA---AGCACCTTGCGCTGCGAGAT 141453 Query 274034 CTTGAACCCATCAACGACCGATGG 274057 || | ||||| || || || || Sbjct 141454 TTTAAGTCCATCGACCACTGACGG 141477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046717527264864