Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq326 136 8e-27 seq8522 91.5 3e-13 seq8449 91.5 3e-13 >seq326 Length=38572 Score = 136 bits (150), Expect = 8e-27 Identities = 665/1043 (64%), Gaps = 49/1043 (5%) Strand=Plus/Minus Query 318990 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 319049 ||| ||||| |||||||| ||||||| ||||| |||||||||| ||| ||| || Sbjct 25893 CTCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTCTCGTCGAG 25834 Query 319050 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 319109 || ||| |||||||||||||| ||||| |||||||| || | |||||| || || Sbjct 25833 GTGCGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCGAAACGCATGGAAGGGTG 25774 Query 319110 CTTCCAAACACTACCGATGGTGGCTTCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCT 319169 |||||| || |||| | || | |||| | ||||| |||| ||| || || || Sbjct 25773 CTTCCACACCTGACCGCTCGTCGGCTCCACCTCACCCGTCAGCATCTTGATCAGCGTCGA 25714 Query 319170 TTTCCCCGCACCGTTTTCGCCCACCACACCGATCCTG-------GAGTTCAGCGATACCT 319222 || || |||||||| ||| | |||| |||| | | ||| || || ||| Sbjct 25713 CTTACCGGCACCGTTGGGGCCAAGCACAGCGATACGGCTCGACAGAGCGCA-CGTCACCG 25655 Query 319223 GGGCATTCACGTTG-TCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCG 319281 | || |||| || | | | || ||||| || |||| | | | || Sbjct 25654 AGATGTT---GTTGATCGACG----GCTTCGGGGTACCAGGGTACTGGTA-CGAGCAGTT 25603 Query 319282 CGT-AGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGG 319340 || || ||||||| |||| |||| | | ||||| || ||||| || Sbjct 25602 GGTCAGACGAATGATGGGCTTACCCTTGTTCTTGATGTCAGCAAGGAAACCAGGCTCCGG 25543 Query 319341 GAAC-----TTCCACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGA 319395 |||| | ||||| ||| || ||| || ||||||| | | ||||| Sbjct 25542 GAACGTGAACTTCACGTTGTC--CGACTC---CAGCTCGTAGTAGGCCTTGGCCTCGGGC 25488 Query 319396 CGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCG 319455 || || ||||| || || || |||||||| |||||||||| || | ||| Sbjct 25487 TTCTGCTCAACGAAGAGAGAAAGGTTGCCCTTGTAGATCTTCAGCTTACGG---GTCTCG 25431 Query 319456 TAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACG 319515 || ||||| || ||| || || ||| ||||| || |||||||| ||||| || | | Sbjct 25430 TAGTGGATGATGTTGGTACACACGTTGTCAAGGAAGCCAGAGTCGTGGGACACCATGATG 25371 Query 319516 CACGAAAC-GTCCTTAAGGTTGATCAGGTA-TTCAATCAA-CCACCTCACGTTAGACACA 319572 | | || ||| | | | | ||||||| ||| |||| ||| ||||| ||| Sbjct 25370 GAGGTGACAGTCGGCACGCTCG-TCAGGTAGTTC--TCAAGCCAGGCGACGTTCTTGACA 25314 Query 319573 GAAAGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGT 319632 | ||||| |||||||| ||||| ||||| | | || ||||| ||||| ||||| Sbjct 25313 TCCAAGTGGTTTGTCGGCTCATCAAGCAGCAGAATGTCAGCCTTCAGCAGCATAGCACGC 25254 Query 319633 GCAAGAGCGAGTTTCATTTTCCACCCTCCGGAAAGAGTGTTAATTGGGGCAGATTGGCGC 319692 | || |||||||||| ||||| || || ||||| | | | | || || | Sbjct 25253 GACAGCTCGAGTTTCATCTTCCAACCACCAGAAAGGGAGCCCACAGCCTGAGCCTGCATC 25194 Query 319693 TCAATATCAAAGCCAACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTTT 319752 || ||||| || | |||| | | || | |||| | | Sbjct 25193 TCGGCGGTGAAGCCGACATCAGCCAGAGCGTCCTCAACCTCCTTGCGAG------GGGTG 25140 Query 319753 TCCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCGT---GTTAGAATCGGAC 319809 ||||| | | |||||| | |||||||||| | |||| | || || || Sbjct 25139 TCCTTCAGGTCGTCATCAATCAGGATGAAGTCAACCA---CCGTAAGCTCAGCCTCCGAA 25083 Query 319810 CCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTTCA 319869 | | || | ||| || ||| | |||| |||| | ||| |||||| || || Sbjct 25082 GCCTGCAGGTTGTGCTCGACGAACACAGTCTTCAGCTCGTCCTTGCTGGGGAAGCCCTCG 25023 Query 319870 AGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACAC 319929 ||||||||||| |||| ||||||||||| || || ||||| ||||| || || ||| Sbjct 25022 AGCTGGCCGTTGGCAATGGCGCGCATCAGCGTCGACTTACCACAACCGTTGGGACCGCAC 24963 Query 319930 AGACCGTAGCGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCCA 319989 |||||||| |||| || || || ||| | || | ||||||||| ||||| | ||| Sbjct 24962 AGACCGTAACGGTGGCCACGCTTGAGGCGAAGACGGGCGTTGTTCAGCAGAATCATACCA 24903 Query 319990 CCATATGCCAGAGAAAATTCACA 320012 || || || || || || || || Sbjct 24902 CCGTAAGCGAGCGAGAACTCGCA 24880 >seq8522 Length=1251 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 |||||||||||||||||||||||||| | ||||||| | ||||||||||||||||||| Sbjct 430 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 489 Query 165771 CCACG 165775 ||||| Sbjct 490 CCACG 494 >seq8449 Length=2013 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 |||||||||||||||||||||||||| | ||||||| | ||||||||||||||||||| Sbjct 370 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 311 Query 165771 CCACG 165775 ||||| Sbjct 310 CCACG 306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057708200006720