Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq6666 140 3e-28 seq92 136 4e-27 >seq6666 Length=2405 Score = 140 bits (154), Expect = 3e-28 Identities = 310/458 (68%), Gaps = 8/458 (2%) Strand=Plus/Plus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 |||| || || ||||| || || | |||||||| | |||||| || ||||| || | Sbjct 1704 ACATGAGGCACGCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGA 1763 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | ||| || ||||| || || ||||| | ||| || || | | |||||| || | Sbjct 1764 AGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCG 1823 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | ||||| || ||||| || | ||| ||||| | | || || | ||||| || || Sbjct 1824 AGAAGAAGATGCCCTCCACAGCTGCGAACGCCAGCAGACGCTCCGGGTACGACGACACTC 1883 Query 17136 T-GTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 | || | ||| || || |||| | ||||| | ||| | || ||||| || Sbjct 1884 GCGGGTCGCA-CCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGATCGTATCG 1942 Query 17195 ATGGCCTTAAATAATTTCTCTTTTTCCTGTAGG-TCGATTATATACGTATCGATGAGTAG 17253 ||||| | | | || || ||| || | || | || ||||| || ||||| || Sbjct 1943 ATGGCACGCAGCAGGTGGTCCTTCTCC-GTCGCATCCTTGATGTACGTGTCAATGAGCAG 2001 Query 17254 GCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGC 17313 |||| || ||||| |||||||| ||||| ||||| || ||||| ||||| ||||| Sbjct 2002 CGAATACACCTCTGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGGGC 2061 Query 17314 TTCCGCTATTTGAACTTCCACGTAGAATCGTTCC--GCTAGATTTTCGTTCACGATGCCG 17371 |||| | || ||||| | ||| |||| || || || ||||||||||||||| Sbjct 2062 CTCCGGCACCTGCACTTCATTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACGATGCCG 2119 Query 17372 TCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 ||||| || ||||| || |||| | ||||| ||||| Sbjct 2120 TCGCTGGCAGCGAAGAAGGCCAGCACGTGCTTGATGAA 2157 >seq92 Length=63871 Score = 136 bits (150), Expect = 4e-27 Identities = 292/429 (68%), Gaps = 8/429 (2%) Strand=Plus/Minus Query 16985 CCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTC 17044 |||||||| | |||||| || ||||| || || ||| || ||| | || || ||| Sbjct 49533 CCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCGTGAGGCCGCGCTTC 49474 Query 17045 TTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAAC 17104 || | ||| || |||| | |||||| || || ||||| || ||||| |||| ||| ||| Sbjct 49473 TTGAGCCAGAAGATCGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCCACGGTTGCGAAC 49414 Query 17105 GCGATTAATCGTTCGGCGTACGTCGCGTCTTT-GTTACGAATCCATTTCTGCACCCACTC 17163 | | | || || | ||||| || || | || | ||| || || |||| | Sbjct 49413 GTCAGCACGCGCTCCGGGTACGACGACACTCGCGGGTCGCA-CCACTTGAGCGCCCAGTG 49355 Query 17164 GGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTG 17223 ||||| | ||| | || ||||| || ||||| | | | || || ||| | Sbjct 49354 CGCTTTCTTCTTCACACACGGGATCGTATCGATGGCACGCAGCAGGTGGTCCTTCTCC-G 49296 Query 17224 TAGG-TCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCA 17282 | | || | || ||||| || ||||| || |||| || ||||| |||||||| | Sbjct 49295 TCGCATCCTTGATGTACGTGTCAATGAGCAGCGAATACACCTCTGAGTGGATGTTCTCGA 49236 Query 17283 TGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATC 17342 |||| ||||| || ||||| ||||| ||||| |||| | || ||||| | ||| Sbjct 49235 TGGCGATCTGGAAACCGTAGAAGCAGCGGGCCTCCGGCACCTGCACTTCATTGCTGAA-- 49178 Query 17343 GTTCC--GCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATG 17400 |||| || || || |||||||||||||||||||| || ||||| || |||| | || Sbjct 49177 GTTCATGGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGAAGAAGGCCAGCACGTG 49118 Query 17401 CTTAATGAA 17409 ||| ||||| Sbjct 49117 CTTGATGAA 49109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517490326129920