Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq6666 143 3e-29 seq92 129 6e-25 >seq6666 Length=2405 Score = 143 bits (158), Expect = 3e-29 Identities = 313/459 (68%), Gaps = 10/459 (2%) Strand=Plus/Plus Query 16194 ACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAA 16253 |||| || ||||||||||| || | || ||||| | |||||| || ||||| || | Sbjct 1704 ACATGAGGCACGCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGA 1763 Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCC 16312 | | | || ||||| || || ||||| | |||||| || | |||| || || ||| Sbjct 1764 AGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAACGAGCCC 1822 Query 16313 GAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAG-CA-T 16370 || ||||| || ||||| |||| ||| || || | | || |||| ||||| | || | Sbjct 1823 GAGAAGAAGATGCCCTCCACAGCTGCGAACGCCAGCAGACGCTCCGGGTACGACGACACT 1882 Query 16371 CTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTT 16430 | | || | ||| || | |||| | ||||| | || | ||| ||||| | Sbjct 1883 CGCGGGT-CGCA-CCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGATCGTAT 1940 Query 16431 CTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTA 16490 | ||||| | || | || || ||| ||| | || ||||| ||||| || | Sbjct 1941 CGATGGCACGCAGCAGGTGGTCCTTCTCCGTCGCATCCTTGATGTACGTGTCAATGAGCA 2000 Query 16491 AACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAG 16550 |||| |||||||| |||||||| ||||| ||||| || || |||||||| || | Sbjct 2001 GCGAATACACCTCTGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGGG 2060 Query 16551 CCTCCGCTATTTGTACTTCCACGTAAAATCGTTCC--GCCAGGTTCTCATTCACGATACC 16608 |||||| | || ||||| | || |||| ||||||||||| |||||||| || Sbjct 2061 CCTCCGGCACCTGCACTTCATTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACGATGCC 2118 Query 16609 GTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 ||| || ||||| || || |||| | |||||| ||||| Sbjct 2119 GTCGCTGGCAGCGAAGAAGGCCAGCACGTGCTTGATGAA 2157 >seq92 Length=63871 Score = 129 bits (142), Expect = 6e-25 Identities = 310/459 (68%), Gaps = 10/459 (2%) Strand=Plus/Minus Query 16194 ACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAA 16253 |||| || | ||||||||| || | || ||||| | |||||| || ||||| || | Sbjct 49562 ACATGAGGCTCGCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGA 49503 Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCC 16312 | | | || ||| | || || ||||| | |||||| |||| |||| || || ||| Sbjct 49502 AGCTCAGGCCAGGCGTGAGGCCGCGCTTCTTGAGCCAGAAGATCG-AGCAGAACGAGCCC 49444 Query 16313 GAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAG-CA-T 16370 || ||||| || ||||| || | ||| || | | | || |||| ||||| | || | Sbjct 49443 GAGAAGAAGATGCCCTCCACGGTTGCGAACGTCAGCACGCGCTCCGGGTACGACGACACT 49384 Query 16371 CTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTT 16430 | | || | ||| || | |||| | ||||| | || | ||| ||||| | Sbjct 49383 CGCGGGT-CGCA-CCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGATCGTAT 49326 Query 16431 CTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTA 16490 | ||||| | || | || || ||| ||| | || ||||| ||||| || | Sbjct 49325 CGATGGCACGCAGCAGGTGGTCCTTCTCCGTCGCATCCTTGATGTACGTGTCAATGAGCA 49266 Query 16491 AACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAG 16550 |||| |||||||| |||||||| ||||| ||||| || || |||||||| || | Sbjct 49265 GCGAATACACCTCTGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGGG 49206 Query 16551 CCTCCGCTATTTGTACTTCCACGTAAAATCGTTCC--GCCAGGTTCTCATTCACGATACC 16608 |||||| | || ||||| | || |||| ||||||||||| |||||||| || Sbjct 49205 CCTCCGGCACCTGCACTTCATTGCTGAA--GTTCATGGCCAGGTTCTCGTTCACGATGCC 49148 Query 16609 GTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 ||| || ||||| || || |||| | |||||| ||||| Sbjct 49147 GTCGCTGGCAGCGAAGAAGGCCAGCACGTGCTTGATGAA 49109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511359780942080