Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq164 224 1e-53 >seq164 Length=50448 Score = 224 bits (248), Expect = 1e-53 Identities = 484/712 (68%), Gaps = 19/712 (3%) Strand=Plus/Plus Query 145684 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCG 145743 || ||||| || ||||| || || ||||| || || || | ||||||| || || || Sbjct 4618 AGCGGCTCGACATGGTTAAGATACACGTGGGCATCACCAATAACGTGGACAAACTCGCCA 4677 Query 145744 GGCTCGAGGCCCGTGAGGTGGGCGACCATGTAG-GTCAGCAGGGAGTAGCTGGCTATGTT 145802 |||| || || | | || || | || || | || |||| | ||||||||| ||||| Sbjct 4678 GGCTTCAGTCCACTCACCTGTGCTATCA-GTCGCGTAAGCAACGCGTAGCTGGCGATGTT 4736 Query 145803 GAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCC 145862 ||| ||||| || || |||||||| ||||||||||||||| ||||||||| | ||| || Sbjct 4737 GAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAGGACAACTCGCC 4796 Query 145863 GCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTC 145922 | | ||||||||||||||||| | | ||| || ||||| || ||||| | || || Sbjct 4797 GTCGGCCACGTAGAACTGGCAGAACATGTGACACGGCGGGAGCGCCATCTCATTGAGATC 4856 Query 145923 CGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTG-CTCTCGGGGTTCCTCTTGATCTCCC 145981 |||||| ||||| || | || |||| || | | | || || || | | || Sbjct 4857 CGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTC-GGATTTGTGCGCAGCTTGT 4915 Query 145982 CTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGA-GTCCACG 146040 | |||| || |||||||||||||||||| || ||| || | | || | |||| | Sbjct 4916 CAATCACCTCAGCGAGCTGGTCCACGCCCTGACCAGTGTAGTC-GGCGTGCATGTCCGTG 4974 Query 146041 TACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCC 146100 ||| || || || || | ||||||||| |||||||| || || ||||| || ||| Sbjct 4975 TACTTTGCTCCAAAATGACGCCACTGGAAGCCGTAGACCGGTCCGAGGTCGCCAACTTCC 5034 Query 146101 CTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTG 146160 | | ||| || | | | || | ||||| || || ||| |||||||||| | | Sbjct 5035 CGCGACTGCAGTCCTCGACTGTCCAGATACTCCCGCGATCCATTGCCGTCCCAGATGTGG 5094 Query 146161 ACGCCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCT 146220 | || || | ||| | | |||| || ||||||||||| |||||||| Sbjct 5095 ATATCCTTCTCCTGCAGCGTGTGCGCACTCGTGTCGCCACTGATGAACCACAGCAGCTCC 5154 Query 146221 TCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGAAC---TGGCCCCGC 146277 || || || | ||||||||| | |||||| || |||| ||||||| | ||||| | Sbjct 5155 TCCGCCACGCCGCGCCAGAAGACGCGCTTGGTCGTGAGCAAGGGGAACACGTTGCCCCTC 5214 Query 146278 AG---GGAGTACTTGGCCTGGTCCCCGAAGACGGACAGGGTGCCCACGCCCGTCC--TGT 146332 || | || | | ||| | |||||||| ||||| || || ||||| | | | Sbjct 5215 AGACTGAAGCGCAT---CTGCGCTCCGAAGACCGACAGCGTCCCTGTTCCCGTGCGATCT 5271 Query 146333 CCCCCCTGCGCACCCCGTTCGCCAGGATCTCCCTGACGGTGTTGAGGTACTG 146384 || | || || | || | | |||||||| || || || ||||||||| Sbjct 5272 CCGCGCTTCG--CTCCTTGGGTCAGGATCTTCCGGATCAAGTCGAGGTACTG 5321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590013779797760