Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq132 145 9e-30 seq570 143 3e-29 seq884 131 2e-25 >seq132 Length=78195 Score = 145 bits (160), Expect = 9e-30 Identities = 164/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||||| |||| || |||||| ||||| ||||| || ||| || || | Sbjct 54774 ACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACC 54715 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| |||||||| || || ||||||||||| | ||| | || |||||| Sbjct 54714 GTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTT 54655 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||| || || |||| ||| | | | || ||| || ||||| || | ||||| Sbjct 54654 GTCCTGGATCTTCTGCTTGA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGA 54596 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || |||||||| |||||||| |||||||| ||||| Sbjct 54595 TCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 54559 Score = 145 bits (160), Expect = 9e-30 Identities = 164/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||||| |||| || |||||| ||||| ||||| || ||| || || | Sbjct 55002 ACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACC 54943 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| |||||||| || || ||||||||||| | ||| | || |||||| Sbjct 54942 GTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTT 54883 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||| || || |||| ||| | | | || ||| || ||||| || | ||||| Sbjct 54882 GTCCTGGATCTTCTGCTTGA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGA 54824 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || |||||||| |||||||| |||||||| ||||| Sbjct 54823 TCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 54787 Score = 143 bits (158), Expect = 3e-29 Identities = 163/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| || |||||| ||||| ||||| || ||| || || || Sbjct 55229 CGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCG 55170 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| |||||||| || || ||||||||||| | ||| | || ||||||| Sbjct 55169 TCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTG 55110 Query 43089 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| || || |||| ||| | | | || ||| || ||||| || | |||||| Sbjct 55109 TCCTGGATCTTCTGCTTGA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGAT 55051 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||||||| |||||||| |||||||| ||||| Sbjct 55050 CGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 55015 Score = 141 bits (156), Expect = 1e-28 Identities = 163/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||||| |||| || |||||| ||||| ||||| || ||| || || | Sbjct 54546 ACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACC 54487 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| |||||||| || || ||||||||||| | ||| | || |||||| Sbjct 54486 GTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTT 54427 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||| || || |||| ||| | | | || ||| || ||||| || | ||||| Sbjct 54426 GTCCTGGATCTTCTGCTTGA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGA 54368 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || |||||||| |||||||| || ||||| ||||| Sbjct 54367 TCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 54331 >seq570 Length=29657 Score = 143 bits (158), Expect = 3e-29 Identities = 164/218 (75%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||||| |||| || |||||| || || ||||| || ||| || || | Sbjct 29040 ACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC 28981 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || ||||| ||||| ||||||||||||| ||| | || |||||| Sbjct 28980 GTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTT 28921 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| || || || || | ||| | | | || ||| || ||||| |||| ||||| Sbjct 28920 GTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGA 28862 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 |||| |||||||| |||||||| || ||||| |||||| Sbjct 28861 TGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATT 28824 Score = 143 bits (158), Expect = 3e-29 Identities = 164/218 (75%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||||| |||| || |||||| || || ||||| || ||| || || | Sbjct 29268 ACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC 29209 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || ||||| ||||| ||||||||||||| ||| | || |||||| Sbjct 29208 GTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTT 29149 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| || || || || | ||| | | | || ||| || ||||| |||| ||||| Sbjct 29148 GTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGA 29090 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 |||| |||||||| |||||||| || ||||| |||||| Sbjct 29089 TGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATT 29052 Score = 143 bits (158), Expect = 3e-29 Identities = 164/218 (75%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||||| |||| || |||||| || || ||||| || ||| || || | Sbjct 29496 ACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC 29437 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || ||||| ||||| ||||||||||||| ||| | || |||||| Sbjct 29436 GTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTT 29377 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| || || || || | ||| | | | || ||| || ||||| |||| ||||| Sbjct 29376 GTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGA 29318 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 |||| |||||||| |||||||| || ||||| |||||| Sbjct 29317 TGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATT 29280 Score = 134 bits (148), Expect = 2e-26 Identities = 164/221 (74%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||||| |||| || |||||| || || ||||| || ||| || || | Sbjct 28812 ACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC 28753 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || ||||| ||||| ||||||||||||| ||| | || |||||| Sbjct 28752 GTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTT 28693 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| || || || || | ||| | | | || ||| || ||||| |||| |||| Sbjct 28692 GTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGTGTGA 28634 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 |||| |||||||| |||||||| || || || |||||| || Sbjct 28633 TGGTCTTGCCCGTCAGCGTCTTGACGAAAATCTGCATTGTT 28593 >seq884 Length=21595 Score = 131 bits (144), Expect = 2e-25 Identities = 145/191 (76%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || ||||| || | || || || |||| || |||||||| || ||||| | Sbjct 4794 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 4853 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | || ||||||||||| | ||| | || |||||||||| |||||| || |||| | | | Sbjct 4854 TCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGA-CATTG 4912 Query 43114 CCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 || | ||||| || ||||| || | ||||||||| |||||||| || ||||| ||| Sbjct 4913 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 4972 Query 43173 AAGATTTGCAT 43183 ||||| ||||| Sbjct 4973 AAGATCTGCAT 4983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571756529880320