Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1232 174 3e-38 seq146 116 8e-21 seq6666 93.3 9e-14 seq1922 91.5 3e-13 seq92 87.8 4e-12 >seq1232 Length=16645 Score = 174 bits (192), Expect = 3e-38 Identities = 857/1355 (63%), Gaps = 63/1355 (5%) Strand=Plus/Minus Query 248419 ATGTACATCACCAAGCGGGACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGGCG 248478 |||||| ||| |||||| |||||||| | || |||| |||||||| || ||||| Sbjct 2578 ATGTACGTCATCAAGCGCGACGGGCGTCAGGAGGACGTCAAGTTCGACAAGATTACGGCG 2519 Query 248479 CGCATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTCGAT--CATGTGGCCATCG 248536 ||||||| |||||||| || || || | || ||| ||| || ||| | ||| Sbjct 2518 CGCATCACCAAGCTCTGCTACGGGCTCAACCCGGACTACGTGGACGCCATCAAG--ATCT 2461 Query 248537 CCCAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACGACAGAACTGGACACCTTAG 248596 ||||||| || | ||||||| ||| |||| ||||| || | ||| | ||| | | Sbjct 2460 CCCAGAAGGTCGTGGCGGGCGTGTACCCCGGCGTAACCACCTCGGAATTAGACGAACTCG 2401 Query 248597 CTGCGGAGACGGCGGCGTACATGGCGATTGCACACCCCGACTACTCGCTGCTGGCCGGGA 248656 | || ||||| || || | | | | | ||||| || | ||| ||||| | | Sbjct 2400 CGGCCGAGACCGCCGCCTGCCAGAGCACTCAGCACCCGGATTTCTCTAAACTGGCGGCAA 2341 Query 248657 GGATCGCCGTCTCAAGGCTTCACAAAGAAACGAAAGAGTCGTTCGTCGAAACCATGGCTG 248716 | ||||||||||| | || ||||| | || || || ||| ||| | ||| | | Sbjct 2340 GAATCGCCGTCTCTAACCTGCACAAGAACACCAACAAGGTGTTTAGCGACAACATCGAGG 2281 Query 248717 --------------ACCTACATGCCTATGGG-----ATGG--------TCGCCGATGACG 248749 ||| || | | ||| ||| |||| ||||||| Sbjct 2280 TTTTTCACAAGAACACCCACGAGAAGACGGGTGCAGATGCGCCCCTCATCGCTGATGACG 2221 Query 248750 TCCAC---ACCGTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACGGCA 248806 | || | |||||| ||| |||| | || ||| || || || | ||| | Sbjct 2220 TATACGAGATCGTCATGCAGCACAAGG---ACGAGCTGAACTCGGCCATCATCCACGACC 2164 Query 248807 AAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAA 248866 || || || ||||| | ||||| || ||||| || ||| ||| ||| || Sbjct 2163 GGGACTTTGATTACGACTACTTTGGGTTTAAAACTCTCGAGCGCGGGTACCTCTTCCGCG 2104 Query 248867 TTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTC 248926 | | ||||| | ||||| || ||||| ||| | ||||| ||||| | || || | Sbjct 2103 TAAACGGCAAAGTGGTGGAGCGTCCGCAGCAAATGATTATGCGCGTGGCACTTGGCATCC 2044 Query 248927 ACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGA 248986 ||||| |||| | | || || ||||||||| ||| || | | | Sbjct 2043 ACAAGAGCAACATTGCGGCCGCCCTGGAGACGTACGAGCTTATGTCGCAAATGTTTTTCA 1984 Query 248987 CACATGCCACACCGACGCTCTTCAACGCCGGTAC----CGTCAACAATCAGCTGAGCTCG 249042 | |||||||| ||||| || || |||||||| || || | |||| ||| || Sbjct 1983 CGCATGCCACCCCGACACTTTTTAACGCCGGCACGCCGCGCCCACAA----CTGTCGTCT 1928 Query 249043 TGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAG 249102 ||||| || | ||||||||||||||||| | || |||||||| |||||| | || || Sbjct 1927 TGCTTCCTATTGGCCATGCAAGACGACTCAATTGAAGGCATTTACGACACGTTAAAGCAA 1868 Query 249103 ACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCG 249162 || || ||||||| || || || || || || | |||||||||||| Sbjct 1867 TGTGCCTGTATCTCTAAATGGGCCGGAGGTATTGGCATCAGTATGCACAACATCCGAGCC 1808 Query 249163 AAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTG--ATGGTATCGTACCCCTCCTTC 249220 | |||||| ||| || || || || || |||| ||| | ||| | || | Sbjct 1807 ACCAACAGCTACATCCGAGGCACGAACGGC-TC-GTCCAATGGCATCATCCCCATGCTGC 1750 Query 249221 GATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGT 249277 | ||| | |||||| ||| | | |||||| ||| || || ||||| || | Sbjct 1749 GGGTGTTTAACGACACCGCGCGGTACGTGGACCAGGGCGGAGGCAAGCGTAAGGGCTCCT 1690 Query 249278 TCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGA 249337 ||||||| |||||||| |||||||| ||| | || |||||| ||||| | |||| Sbjct 1689 TCGCCATCTATTTGGAGCCTTGGCACGCAGATGTGTTCGAGTTCTTGGACCTCCGTAAGA 1630 Query 249338 ACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACT 249397 || ||||||||||| | | || || ||||| ||||||| ||| ||||| | || Sbjct 1629 ACCACGGCAACGAGTTGCACCGCGCTCGCGACCTGTTCTACGCCCTTTGGGTGCCTGATC 1570 Query 249398 TGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCC 249457 |||||||| | || | ||| | ||| | |||| || || || ||| |||| Sbjct 1569 TGTTCATGAAGAGGGTGGAAGCCAATGGCAAGTGGAGTCTCTATTGCCCTAACGAGGCCC 1510 Query 249458 CGGACCTCATCGATCTACACGGCGCCGACTTCGACCAAGCCTATAAGAAATACGAATCCA 249517 | | ||| || |||| ||| ||||| |||| | || ||||| | Sbjct 1509 CTGGACTCTATGAGTGCTGGGGCGACGAATTCGAGGCCCTCTATGAAAAGTACGAGACGG 1450 Query 249518 ACG---GCATCGGCAAGACAATCAAGGCTCGGACCCT---TTTTGCGAAGGTGGTGGAGT 249571 | | || | ||||||| ||||| || | | || || || | | |||| Sbjct 1449 AGGGACGCGCCCGCAAGACGATCAACGCCCAGCAGCTGTGGTTCGCCA---TATTGGACG 1393 Query 249572 CCCAGATAGAGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAGAGT 249630 ||||||| ||||| || | ||| | |||| |||| ||| |||||| |||| |||| Sbjct 1392 CCCAGATTGAGACGGGAGTGCCCT-TTATGTTGTACAAGGACGCGGCCAACCGCAAGTCG 1334 Query 249631 AACCAACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAGAGGTGATTCAATAC 249690 ||||| | | || || || |||||||| || | || |||||||| | ||| Sbjct 1333 AACCAGAAGAACCTCGGCACGATCCGCTCCAGCAACTTATGCTGTGAGGTGATGGAGTAC 1274 Query 249691 TCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725 |||| ||| ||| | || || |||||| |||| Sbjct 1273 ACGTCGCCGGACGAGGTGGCTGTGTGCAACTTGGC 1239 >seq146 Length=52653 Score = 116 bits (128), Expect = 8e-21 Identities = 267/396 (67%), Gaps = 11/396 (3%) Strand=Plus/Plus Query 253994 TGGCGACCTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCAT 254053 |||| | || || || ||| | ||| |||| ||||| || || ||||||||||| ||||| Sbjct 11241 TGGCCAGCTGCCCCACTTGTTGTTCTACGGACCTCCAGGCACGGGCAAGACGTCCACCAT 11300 Query 254054 CCTGGCGCTGGCCCGAACCCTGTTGGGCGAGGGGAAC---ATGAGAGAGCGCGTGCTCGA 254110 ||||| ||| || || || || || | | || | ||| | | || Sbjct 11301 TGTGGCGGTGGGGCGCCAGCTCTTCGGTCCGGACTTCCGCAAGAATGGCCGCTTCTTGGA 11360 Query 254111 GCTGAACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTC 254170 ||||||||| || || || || || | | || || ||||| ||| |||| | ||| | Sbjct 11361 GCTGAACGCATCGGATGACCGAGGCATTAAGGTGGTGCGCGAGAAGGTCAAAAGCTTCGC 11420 Query 254171 CAAGATGTCGATTTCGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGA 254230 | || | || | | ||| | ||| ||||| || ||| || | | || || Sbjct 11421 CCAGGGTGCCATCAGCACCT-CCAGC--GGCCTCCCGCCCTTTAAGATCATTGTGCTCGA 11477 Query 254231 CGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCA 254290 ||||| ||| ||||||||| |||||| ||||| || || || || | |||||||| | Sbjct 11478 TGAGGCCGACTCCATGACGGGCGACGCACAGTCGGCTCTGCGTCGTATGATGGAGAACTA 11537 Query 254291 CTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTG--TCGAAGATCATCGCCCCG 254348 |||| || ||||| || ||||| | || ||||| ||| ||| | | || | || Sbjct 11538 CTCCAAGGTCACGCGCTTCTGCCTCATCTGTAACTATGTGAGTCGCATA--ATTGAGCCT 11595 Query 254349 CTGGCTTCTCGGTGCGCCAAGTTTCGATTCAGCACC 254384 ||||||| || ||||||||||| || ||| ||||| Sbjct 11596 GTGGCTTCCCGATGCGCCAAGTTCCGTTTC-GCACC 11630 >seq6666 Length=2405 Score = 93.3 bits (102), Expect = 9e-14 Identities = 117/158 (74%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || || | |||| ||||||| |||| | ||||| |||||||| ||||| ||||| || Sbjct 1412 ACACCCGCCTTGGAGTACTCGCCCACGCGCTTCTCGAAAAAGTTCGTCTTGCCCTGCAGC 1471 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTTGGCGCAGTTGTACACCTT-GTCGTACCCCAG 157362 || |||||||||||||| ||||| ||||| |||||| | ||| | | | ||||| Sbjct 1472 GAGATCATGTCCATCCAGTCGAACGGGTTCTTTACGTTGTAGATCTTCGACACA-CCCAG 1530 Query 157363 CTGGTTCAGCCAGTAGTCCGCCACAAACTTGATGTACT 157400 | || |||| ||| ||||| |||| |||||||| Sbjct 1531 CGAGTACAGCAGACGGTCGGCCACGAACTCGATGTACT 1568 >seq1922 Length=11443 Score = 91.5 bits (100), Expect = 3e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 115402 ATCGCACATCTGCTCTGAATCGGTTCGATGATTTTGGTGGAGTTGTTGCAGACTATGATG 115461 || || || | |||||| || ||||| ||||| ||||| |||||||||||| | | | Sbjct 6709 ATGGCGCAGCGGCTCTGGATGGGTTCAATGATCTTGGTCGAGTTGTTGCAGGCCAGCGCG 6650 Query 115462 AACCGCGTCGTGCTCGAGTAAACATCCATGATCCGTCGCAGCGCCTGGAAAGCACCAGGT 115521 || ||||| ||| |||| | | |||||| | || ||||||||||| || | | Sbjct 6649 AAGCGCGTGGTGGCCGAGAAGATCTCCATGGTGCGGCGCAGCGCCTGCTGGGCCGCGGAC 6590 Query 115522 GTCATCGAGTCTGCCTCGTCGAGAACGACAATCTT 115556 ||||| ||||| |||||||| || | || ||||| Sbjct 6589 GTCATGGAGTCGGCCTCGTCCAGGATCACGATCTT 6555 >seq92 Length=63871 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 157247 CCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAA 157306 |||| ||| ||||||| |||| | ||||| |||||||||||||| ||||| || || Sbjct 54274 CCGGCATTGGAGTACTCGCCCACGCGTTTCTCGAAAAAGTTGGTCTTGCCCTGCAGCGAG 54215 Query 157307 ATCATGTCCATCCACTCGAATGGGTT 157332 |||||||||||||| ||||| ||||| Sbjct 54214 ATCATGTCCATCCAATCGAACGGGTT 54189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073648854792192