Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq164 122 2e-22 >seq164 Length=50448 Score = 122 bits (134), Expect = 2e-22 Identities = 449/687 (65%), Gaps = 16/687 (2%) Strand=Plus/Minus Query 35137 AGGAGTGAAGAAGGACGATAGAACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAAT 35196 ||||| |||| | ||| | || |||||||| || || || | || ||| | || || Sbjct 5286 AGGAGCGAAGCGCGGAGATCGCACGGGAACAGGGACGCTGTCGGTCTTCGGAGCGCAGAT 5227 Query 35197 GAGGTTCTCTCTTCGAGACGACACTATTCCAGTT-CTCACTACCAAGAAAATTTTCTGGA 35255 | | ||| ||| | | | || | |||| || ||||| |||||| | |||||| Sbjct 5226 GCGCTTCAGTCTGAGGGGCAACG-TGTTCCCCTTGCTCACGACCAAGCGCGTCTTCTGGC 5168 Query 35256 GAGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGCAATAC-AGA-CGCCAAAGAATT 35313 | || || | ||| || || |||||||||||| ||| | || || ||| | | | Sbjct 5167 GCGGCGTGGCGGAGGAGCTGCTGTGGTTCATCAGTGGCGACACGAGTGCGCACACGC--T 5110 Query 35314 GGCCAAGAAGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAG 35373 | ||||| | || ||||||||| ||| ||||| |||||||| | | |||||||| | Sbjct 5109 GCAGGAGAAGGATATCCACATCTGGGACGGCAATGGATCGCGGGAGTATCTGGACAGTCG 5050 Query 35374 AGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCA 35433 ||| | | | | || || || | ||||| || ||||| ||||| |||||||| Sbjct 5049 AGGACTGCAGTCGCGGGAAGTTGGCGACCTCGGACCGGTCTACGGCTTCCAGTGGCGTCA 4990 Query 35434 TTTTGGTGCTGAATA-TGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAAT 35492 |||||| || | || || || | |||| || ||||| |||| | || || Sbjct 4989 TTTTGGAGCAAAGTACACGGACATGCAC-GCCGACTACACTGGTCAGGGCGTGGACCAGC 4931 Query 35493 TGGCCAATATACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGG 35552 | || | | | | | ||| | |||||| || | |||| | || ||| Sbjct 4930 TCGCTGAGGTGATTGACAAGCTGCGCACAAATCCGACCGACCGTCGGATCGTGCTGTCGG 4871 Query 35553 CATGGAATCCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATG-ACTGCTCAA 35611 | |||||||| |||||| | ||||| || || || || |||||| |||| || Sbjct 4870 CGTGGAATCCGGCGGATCTCAATGAGATGGCGCTCCCGCCGTGTCACATGTTCTGC-CAG 4812 Query 35612 TTTTATGTGGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCG 35669 || || ||||| | || || ||||| |||||| |||| ||||| || || ||| | Sbjct 4811 TTCTACGTGGCCGACGGCGAGTTGTCCTGCCAGATGTACCAGCGCTCGGCCGACATG--G 4754 Query 35670 GGTTGGGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCATCTGATGGC-CAGT 35728 | | |||||||| ||||| || || ||| | | || || | ||||| || ||| Sbjct 4753 GACTTGGCGTGCCGTTCAACATCGCCAGCTACGCGTTGCTTACGCGACTGATAGCACAG- 4695 Query 35729 ATGGTGGGTCTAAAACCGGGAGAGTTTATCCTCACTCTTGGTGACGCACACATTTATAAT 35788 || || || || || || |||||| ||| | | ||||||| || ||| | ||| | Sbjct 4694 GTGAGTGGACTGAAGCCTGGCGAGTTTGTCCACGTTATTGGTGATGCCCACGTGTATCTT 4635 Query 35789 ACCCACATTGAGGTGTTAAAGAAGCAG 35815 | ||| | ||| | | |||||||| Sbjct 4634 AACCATGTCGAGCCGCTCCAGAAGCAG 4608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989475670239520