Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1232 86.0 8e-12 >seq1232 Length=16645 Score = 86.0 bits (94), Expect = 8e-12 Identities = 404/640 (63%), Gaps = 4/640 (1%) Strand=Plus/Plus Query 63273 TTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCG 63332 ||||| || |||||||| | |||||| || || || || | | | || |||| Sbjct 1560 TTCATGAACAGATCAGGCACCCAAAGGGCGTAGAACAGGTCGCGAGCGCGGTGCAACTCG 1619 Query 63333 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63392 || || ||||| || || | |||| | | | ||| | ||||| || ||||| Sbjct 1620 TTGCCGTGGTTCTTACGGAGGTCCAAGAACTCGAACACATCTGCGTGCCAAGGCTCCAAA 1679 Query 63393 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63452 || ||||| | || || ||| ||| ||||| || | ||| | ||||||| Sbjct 1680 TAGATGGCGAAGGAGCCCTTACGCTTGCCTCCGCCCTGGTCCACGTACCGCGCGGTGTCG 1739 Query 63453 TTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAG 63512 ||| | || | || ||| || || || || || || || || || || ||| ||| Sbjct 1740 TTAAACACCCGCAGCATGGGGATGATGCCATTGGACGAGCCGTTCGTGCCTCGGATGTAG 1799 Query 63513 CCTCCACTGGCACGAATATTACTAAT--TGATAGACCTATTCCCCCTGCCATTTTAGAGA 63570 | |||| || || || || |||| || || || || ||| |||||||| Sbjct 1800 CTGTTGGTGGCTCGGATGTTGTGCATACTGATG--CCAATACCTCCGGCCCATTTAGAGA 1857 Query 63571 TTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAA 63630 | | || ||| | ||||||||||| || |||||||| || || || |||| | Sbjct 1858 TACAGGCACATTGCTTTAACGTGTCGTAAATGCCTTCAATTGAGTCGTCTTGCATGGCCA 1917 Query 63631 GTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAG 63690 ||| || || |||| ||| | || | || || || ||||| | || || | | Sbjct 1918 ATAGGAAGCAAGACGACAGTTGTGGGCGCGGCGTGCCGGCGTTAAAAAGTGTCGGGGTGG 1977 Query 63691 CGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCC 63750 | ||||| || | ||| || | || | ||||||||| | || | | || | | Sbjct 1978 CATGCGTGAAAAACATTTGCGACATAAGCTCGTACGTCTCCAGGGCGGCCGCAATGTTGC 2037 Query 63751 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGT 63810 | || || || | ||| || ||||| | ||| ||||| || | || || | |||| Sbjct 2038 TCTTGTGGATGCCAAGTGCCACGCGCATAATCATTTGCTGCGGACGCTCCACCACTTTGC 2097 Query 63811 TGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 63870 ||||| || | ||| || | ||||||||| ||||| |||| ||| || Sbjct 2098 CGTTTACGCGGAAGAGGTACCCGCGCTCGAGAGTTTTAAACCCAAAGTAGTCGTAATCAA 2157 Query 63871 AGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTT 63910 |||| || |||| || || |||| || |||| ||||| Sbjct 2158 AGTCCCGGTCGTGGATGATGGCCGAGTTCAGCTCGTCCTT 2197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629750335480320