Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq164 214 2e-50 >seq164 Length=50448 Score = 214 bits (236), Expect = 2e-50 Identities = 300/419 (72%), Gaps = 18/419 (4%) Strand=Plus/Plus Query 20925 AGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCC 20984 || || || || ||||| || |||||||| ||||| | ||| ||||| || || Sbjct 4618 AGCGGCTCGACATGGTTAAGATACACGTGGGCATCACCAATAACGTGGACAAACTCGCCA 4677 Query 20985 GGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTA 21044 || |||| || | || || || ||||| ||| || | ||||||||||||||||| Sbjct 4678 GGCTTCAGTCCACTCACCTGTGCTATCAGTCGCGTAAGCAACGCGTAGCTGGCGATGTTG 4737 Query 21045 AACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCC 21104 ||||| || || || ||||||||||| || | |||||||| ||||||||||| ||| || Sbjct 4738 AACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAGGACAACTCGCCG 4797 Query 21105 CGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCC 21164 |||||||| ||||| || || | |||||| || ||||| |||||| ||| ||| Sbjct 4798 TCGGCCACGTAGAACTGGCAGAACATGTGACACGGCGGGAGCGCCATCTCATTGAGATCC 4857 Query 21165 GCGGGGTTCCACGCGCACATAACGATGCGCCGATCG--------TG-GGGCCGCCTGTTA 21215 || || |||||||| ||| ||||| || || ||| || | || || ||| | Sbjct 4858 GCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTCGGATTTGTGCGCAGCTTGTCA 4917 Query 21216 ATTAGATCCACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCC 21275 || |||| | | || ||||||||||| |||||||| ||||| ||||| Sbjct 4918 AT------CACCTC--AGCG-AGCTGGTCCACGCCCTGACCAGTGTAGTCGGCGTGCATG 4968 Query 21276 CCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCC 21334 || |||||| || |||||||| | ||||||||| ||||| ||||| || || ||||| Sbjct 4969 TCCGTGTACTTTGCTCCAAAATGACGCCACTGGAAGCCGTAGACCGGTCCGAGGTCGCC 5027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427731455685120