Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq6666 203 5e-47 seq92 140 5e-28 seq164 123 4e-23 seq1232 122 1e-22 seq1090 116 5e-21 >seq6666 Length=2405 Score = 203 bits (224), Expect = 5e-47 Identities = 592/891 (66%), Gaps = 42/891 (5%) Strand=Plus/Minus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| || ||| | | || ||| | ||| | |||||||| ||||| |||| || || Sbjct 2289 CTGTTCCCGATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAGGCGTCATTC 2230 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||||| ||| ||| | || ||| | ||||| | || |||| || | |||| Sbjct 2229 TGGACGGCCGAGGAGCTGGACCTGGTGCACGACCTCAAGGACTGGGCGAACC---TGACG 2173 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || | ||||| || || |||| | |||||||||| || | | ||| || ||| Sbjct 2172 GACAACGAGCGGTTCTTCATCAAGCACGTGCTGGCCTTCTTCGCTGCCAGCGACGGCATC 2113 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCT-CAA-GAGTTGACCATTCCAGAGGTGTCGT 125232 || ||||| || ||| | || || || ||| || || | || |||| | Sbjct 2112 GTGAACGAGAACCTG--GCCATGAACTTCAGCAATGAAGTGCAGGTGCCGGAGGCCCGCT 2055 Query 125233 GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 |||| ||||| ||||| ||| || |||||| | ||||| || |||| || || | Sbjct 2054 GCTTCTACGGTTTCCAGATCGCCATCGAGAACATCCACTCAGAGGTGTATTCGCTGCTCA 1995 Query 125293 TTGACATGTACATTCGCGATCCGCAACGTAAA-----CACATGCTCTTTAACGCAATCGA 125347 |||||| |||||| ||| || ||| | | ||| |||| | || ||||| Sbjct 1994 TTGACACGTACATCAAGGATGCG--ACGGAGAAGGACCACCTGCTGCGT---GCCATCGA 1940 Query 125348 CACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGA-CGACA 125406 ||| | |||| | | || || || || |||| | | |||| ||| ||| Sbjct 1939 TACGATCCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGAGT 1880 Query 125407 AGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGG 125466 ||| |||||| | || | ||| |||| ||||| || || |||||||||||||| |||| Sbjct 1879 -GTCGTCGTACCCGGAGCGTCTGCTGGCGTTCGCAGCTGTGGAGGGCATCTTCTTCTCGG 1821 Query 125467 G-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCAC 125525 | | ||| ||| ||||||| ||||||||||||||||| |||||||| || |||| | Sbjct 1820 GCTCGTTCTGCT-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTC 1762 Query 125526 AGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTT 125585 |||||| | || || ||||||||| | ||| ||||| || || ||| Sbjct 1761 TCGAACGAGCTGATCAGCCGTGACGAGGGCATGCACACGGACTTCGCGTGCCTCATGTAC 1702 Query 125586 CGCAACTATCTGCGTCCCGAG-TGC---AGATCCAGCGATGAAAAGGTCATCAACATTGT 125641 ||| ||| | || ||| ||| || ||| || | | | || || Sbjct 1701 TCCAAG---CTGGTGAACAAGCTGCCGGAGAGCC-GCG-TGCA--------CGAGATCGT 1655 Query 125642 AACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC-AGCATGA 125700 ||| || |||| ||| || || ||||| | || || || || || ||| ||| Sbjct 1654 GCGCGACGCGGTGACGATCGAGCACGAGTTCGTGCGTGACTCGCTCCCTGTGGAGC-TGA 1596 Query 125701 TTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGT 125760 | |||||||||| ||| |||||| ||||||| ||||| ||||| || ||||| |||| Sbjct 1595 TCGGCATGAACTCGGGGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCTGCTGT 1536 Query 125761 ACGAGTTGATTG-GCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGC 125819 || | || || | || ||||| ||||||| ||||| || || || | ||| || Sbjct 1535 ACTCGCTGGGTGTGTCG-AAGATCTACAACGTAAAGAACCCGTTCGACTGGATGGACATG 1477 Query 125820 ATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 || || || |||| ||||| ||||||||||||||| || |||||||| Sbjct 1476 ATCTCGCTGCAGGGCAAGACGAACTTTTTCGAGAAGCGCGTGGGCGAGTAC 1426 >seq92 Length=63871 Score = 140 bits (154), Expect = 5e-28 Identities = 390/587 (66%), Gaps = 21/587 (4%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 ||||| || ||| | | || ||| | ||| | |||||||| || || ||||||| || Sbjct 48977 CTGTTCCCGATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAAGCGGAGGCCTCGTTC 49036 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||||| ||| ||| | || ||| | |||||| | || |||| || | |||| Sbjct 49037 TGGACGGCCGAGGAGCTGGACCTGGTGCACGACCTGAAGGACTGGGCGAACC---TGACG 49093 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || | ||||| || || |||| | |||||||||| || | | ||| || ||| Sbjct 49094 GACAACGAGCGGTTCTTCATCAAGCACGTGCTGGCCTTCTTCGCTGCCAGCGACGGCATC 49153 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCT-CAA-GAGTTGACCATTCCAGAGGTGTCGT 125232 || ||||| || ||| | || || || ||| || || | || |||| | Sbjct 49154 GTGAACGAGAACCTG--GCCATGAACTTCAGCAATGAAGTGCAGGTGCCGGAGGCCCGCT 49211 Query 125233 GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 |||| ||||| ||||| ||| || |||||| | ||||| || |||| || || | Sbjct 49212 GCTTCTACGGTTTCCAGATCGCCATCGAGAACATCCACTCAGAGGTGTATTCGCTGCTCA 49271 Query 125293 TTGACATGTACATTCGCGATCCGCAACGTAAA-----CACATGCTCTTTAACGCAATCGA 125347 |||||| |||||| ||| || ||| | | ||| |||| | || ||||| Sbjct 49272 TTGACACGTACATCAAGGATGCG--ACGGAGAAGGACCACCTGCTGCGT---GCCATCGA 49326 Query 125348 CACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGA-CGACA 125406 ||| | |||| | | || || || || |||| | | |||| ||| ||| Sbjct 49327 TACGATCCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGAGT 49386 Query 125407 AGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGG 125466 ||| |||||| | || | || || | ||||| |||| |||||||||||||| |||| Sbjct 49387 -GTCGTCGTACCCGGAGCGCGTGCTGACGTTCGCAACCGTGGAGGGCATCTTCTTCTCGG 49445 Query 125467 G-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCAC 125525 | | ||| ||| | ||||| ||||||||||||||||| |||| ||| || |||| | Sbjct 49446 GCTCGTTCTGCT-CGATCTTCTGGCTCAAGAAGCGCGGCCTCACGCCTGGCCTGAGCTTC 49504 Query 125526 AGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 |||||| | || || ||||||||| | ||| ||||| || Sbjct 49505 TCGAACGAGCTGATCAGCCGTGACGAGGGCATGCACACGGACTTCGC 49551 >seq164 Length=50448 Score = 123 bits (136), Expect = 4e-23 Identities = 278/410 (68%), Gaps = 6/410 (1%) Strand=Plus/Minus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 ||||| || || || || ||||| ||||||||| | || | || | ||||| ||| Sbjct 5027 GGCGACCTCGGACCGGTCTACGGCTTCCAGTGGCGTCATTTTGGAGCAAAGTACACGGAC 4968 Query 70127 -TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATT-GCAGACAATCATTGACACTC 70184 ||| | | ||||| | |||||||| || || || | || || | ||||||| | Sbjct 4967 ATGCACGCC-GACTACACTGGTCAGGGCGTGGACCAGCTCGCTGAGG-TGATTGACAAGC 4910 Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 | || ||||| || || | ||||||| ||| | |||||||| || ||| | Sbjct 4909 TGCGCACAAATCCGACCGACCGTCGGATCGTGCTGTCGGCGTGGAATCCGGCGGATCTCA 4850 Query 70245 ACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTACTCGTACGATGGCAAA 70303 | | ||||| || || ||||||||| |||| || ||||| ||| | ||| ||| | Sbjct 4849 ATGAGATGGCGCTCCCGCCGTGTCACATGTTCTGC-CAGTTCTACGTGGCCGACGGCGAG 4791 Query 70304 TTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATT 70363 ||||| ||| ||||| ||| | ||||||||||| || || || || || ||||| Sbjct 4790 TTGTCCTGCCAGATGTACCAGCGCTCGGCCGACATGGGACTTGGCGTGCCGTTCAACATC 4731 Query 70364 GCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAG 70423 || ||||| | || | |||| |||| || || | | || ||||| | |||| Sbjct 4730 GCCAGCTACGCGTTGCTTACGCGACTGATAGCACAGGTGAGTGGACTGAAGCCTGGCGAG 4671 Query 70424 TTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCC 70473 || || ||| ||||| || || ||||||||| | || || ||||||| Sbjct 4670 TTTGTCCACGTTATTGGTGATGCCCACGTGTATCTTAACCATGTCGAGCC 4621 >seq1232 Length=16645 Score = 122 bits (134), Expect = 1e-22 Identities = 292/434 (67%), Gaps = 6/434 (1%) Strand=Plus/Minus Query 97785 AACTCTTTGCTGGTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAATGCT 97844 ||||| |||||||||| || ||||| |||||| |||| |||| | |||| || Sbjct 796 AACTCGCTGCTGGTGGCCCCCATGCCGACGGCTTCCACGGCCCAGATCCTTGGAAACAAC 737 Query 97845 GAATCTTTTGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAGTTT 97904 || ||| | || |||| |||||| ||||||||| | | || | | |||||||||| Sbjct 736 GAGTCTATCGAGCCGTACACGTCCAACATGTACAACCGCCGAGTGCTGGCTGGAGAGTTC 677 Query 97905 -CAATTGACCAACGTGCACTTGGTTCGAGACTTGGAACG-GCTCAATCTGTGGAACGATG 97962 | || | | ||| | || || | || || | || |||| | |||| | Sbjct 676 ACGATCGTC-AACAAGTACCTGATGAAGGAGCTG-ATCGAGCTCGGCATCTGGACGCCGG 619 Query 97963 ACATGGCCCAGTTGATCATGTACAACAATGGGTCCATTCAAAACATTACCATCATCCCGG 98022 || || | | |||| || || ||| || ||| | || ||| | | ||||||| Sbjct 618 ACGTGCGCAACCAGATCTTGAACGACAGCGGCTCCGTGCAGAACGTCAAGGCGATCCCGG 559 Query 98023 AAGA-GTTGCGCAGAATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGAT 98081 | | || | |||| |||||||| || |||||||| | ||| || || | || Sbjct 558 ACCACGTCAAGGAGAAG-TACAAGACGGTGTGGGAGATCAAGCAGAAGGCGGTGCTGGAC 500 Query 98082 ATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCC 98141 || | |||||| | |||| |||||| ||||||||| ||| |||| | || | ||| Sbjct 499 CTGTCGGCCGACCGCGGTGCGTACATTTGCCAGAGTCAGTCGCTCAACATCCACATCGCC 440 Query 98142 GAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAG 98201 || || ||| ||| | || ||||| ||||| ||||| ||||| ||||| |||||| Sbjct 439 GACCCGACCATCAGCAAGCTCACGTCGATGCACTTCTACGCCTGGAAGAAGGGGCTCAAG 380 Query 98202 ACGGGCATGTACTA 98215 || ||||||||||| Sbjct 379 ACCGGCATGTACTA 366 >seq1090 Length=18566 Score = 116 bits (128), Expect = 5e-21 Identities = 217/317 (68%), Gaps = 4/317 (1%) Strand=Plus/Minus Query 127443 GAATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGG 127502 ||| ||||| |||||||||||||| |||||| || || |||||||| | ||||||| Sbjct 4005 GAAGCCGTGGGTCAGGTGGCCTCCACTGGGCAGGTCCAGGCCCATGATGCGGTCGTGCGG 3946 Query 127503 TTTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACA 127562 | | | ||||||||||| |||||||| ||||||||||||||| || || Sbjct 3945 GCGCAGCAGCGCCGTGTACACGGCGAAGTTGGCGGGCGAGCCCGAGTACGGCTGCACGTT 3886 Query 127563 CACTCCCCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAG 127622 || ||||| | | ||||| || | | || | || |||||||| || | Sbjct 3885 GACGCCCCACTTGTCCTCGTCCAGGCCGTAGGCCGTCAGGGCGCGCTGCTGGCACAGGAT 3826 Query 127623 TTCGATGCGATCGATAAACTCGTTACCACCATAGTA--TCGCTTTCCGGGCCTACCCTCC 127680 ||||| ||||| | |||||| || || ||||| ||| ||| ||| ||||| Sbjct 3825 CTCGATCTTGTCGATGATCTCGTTGCCGCCGTAGTAGCGCGCGTTC--GGCAGGCCCTCG 3768 Query 127681 GAGTACTTGTTGATGAGACACGAACTCATGCATTCTCGCACCGGTAGAGTGGTAAAGTTT 127740 | |||||||||| | |||||||| | || ||| || || | | | || ||||| Sbjct 3767 GCGTACTTGTTGGTCAGACACGAGCCCAGGCAGTCCATGACGGCGCGCGACGTGAAGTTC 3708 Query 127741 TCCGATGCGATCAACTC 127757 ||||| ||||| | ||| Sbjct 3707 TCCGAGGCGATGAGCTC 3691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740980054877440