Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_005261.2 Length=137821 Score E Sequences producing significant alignments: (Bits) Value seq1191 89.7 5e-13 >seq1191 Length=17317 Score = 89.7 bits (98), Expect = 5e-13 Identities = 183/270 (68%), Gaps = 19/270 (7%) Strand=Plus/Minus Query 99544 CGCACGGTGAGCGAGGTGTTGAGCAGCAGCACGCCGCGGCGCGCCCAGGCCTCCAGGCAG 99603 || ||||| ||| |||||||||||||||||||| | || |||| || |||| Sbjct 6510 CGGACGGTAAGCACAGTGTTGAGCAGCAGCACGCCCTGTCGACTCCAGCAAGACAAGCAG 6451 Query 99604 CCGTGCTGCGGCCGCGGGGTCCCGGGGAAGTTCTTCTGCACGGCCGCGT---AGATGTTC 99660 ||||| || |||| | || | |||| | |||| | | |||||||| Sbjct 6450 CCGTGGGTGGGGCGCGCAATGCCCACGTCGTTCAT------GGCCTCCTTGAAGATGTTC 6397 Query 99661 TGGAGGCTGGGCGGGATCGGAACGCCGCGGTTCACGCTGAAGGCCAGGCCGTGGGCCTGC 99720 | |||||||||||| ||| || ||| || ||| ||| ||| ||||| |||||| Sbjct 6396 TTGAGGCTGGGCGGCGGCGGGACTCCGTGGCGCACCGAGAAACTCAGTCCGTGAGCCTGC 6337 Query 99721 CCGTGGCTGTGGTAGGGGTCCTGGCCCAGGATGACGACCTTGACGTCCTCG--GGCGC-- 99776 | | |||||| |||||||||||||| || || ||||||| ||| | ||||| Sbjct 6336 TGCGGCCCGTGGTACGGGTCCTGGCCCAGAATCACCACCTTGAGGTCGGAGAAGGCGCAG 6277 Query 99777 -CGCGTAGCGCGTCCACGCGAAGACGTCCG 99805 | || ||||| |||||| ||||||| Sbjct 6276 TCTCGCAGCGC-----CGCGAACACGTCCG 6252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440852111965440