Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq760 161 9e-35 >seq760 Length=24494 Score = 161 bits (178), Expect = 9e-35 Identities = 198/268 (74%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 5500 CACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACG-CCACCT 5558 |||||||||| ||||| ||||| ||||| | |||| || || | | || |||||| Sbjct 6981 CACGCCCGTGCTGCCGAAGCCGCCGGCGCCACGCGCCGTGTCCTCGAT-CTCGTCCACCT 7039 Query 5559 CTTCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCT 5618 | | | || ||| || | |||| ||| |||||||| | ||||| || || Sbjct 7040 CCTGGATCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTCTCCGCGCT 7099 Query 5619 TTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGT 5678 | || ||| || | | || ||||||||| | ||||||||||||||||||||||| Sbjct 7100 TGACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCCGCGGTAGT 7159 Query 5679 CGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGG 5738 ||||||| |||||||| |||||| ||||||||| | ||||| ||| || |||||||| | Sbjct 7160 CGGCGTCGATCACGCCGGCGCCCGTGTCGATGAACTTCTTGAGCGCGAGTCCGGAGCGCG 7219 Query 5739 GAGCCACGCGGCCGTAGCACCCATCGGG 5766 | |||||||| ||||||| || ||||| Sbjct 7220 GCGCCACGCGCGCGTAGCAGCCGTCGGG 7247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430009618435328