Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq164 134 9e-27 seq760 93.3 3e-14 >seq164 Length=50448 Score = 134 bits (148), Expect = 9e-27 Identities = 371/564 (66%), Gaps = 21/564 (4%) Strand=Plus/Plus Query 25413 AGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGG 25472 ||||| ||| ||||| || || || | || || ||||| || || || | | |||| Sbjct 4606 AGCTGCTTCTGGAGCGGCTCGACATGGTTAAGATACACGTGGGCATCACCAATAACGTGG 4665 Query 25473 ACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAG 25532 |||||||| || || | || || | || | || |||| ||| || | |||| Sbjct 4666 ACAAACTCGCCAGGCTTCAGTCCACTCACCTGTGCTATCAGTCGCGTAAGCAACGCGTAG 4725 Query 25533 CTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACA 25592 ||||||||||| || || || || | |||||||| || || | |||||| | ||| || Sbjct 4726 CTGGCGATGTTGAACGGCACGCCAAGTCCCATGTCGGCC-GAGCGCTGGTACATCTGGCA 4784 Query 25593 CGAGAGCTCTTCGTCGCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTAT 25652 || | ||| ||||| |||||| ||||| || | ||| ||||| || || || || Sbjct 4785 GGACAACTCGCCGTCGGCCACGTAGAACTGGCAGAACATGTGACACGGCGGGAGCGCCAT 4844 Query 25653 AAGGCCCA---AG-TCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTCT-TCTGGG 25707 | || || || || ||||| || ||| | ||| | | ||| || | Sbjct 4845 ----CTCATTGAGATCCGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTCGGAT 4900 Query 25708 TTGTCCC-----TGATAAGATCCGCGGTGTTTTGCAGCTGATCCACCCCCATCCCCGAGT 25762 |||| | || || || | | | ||||| ||||| ||| || | || Sbjct 4901 TTGTGCGCAGCTTGTCAATCACCTCAGCG------AGCTGGTCCACGCCCTGACCAGTGT 4954 Query 25763 AGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCG 25822 |||| || |||||||||||||| |||||| |||| | ||||||||| ||||| |||| Sbjct 4955 AGTCGGCGTGCATGTCCGTGTACTTTGCTCCAAAATGACGCCACTGGAAGCCGTAGACCG 5014 Query 25823 GTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAAC 25882 |||| ||||| ||| |||||| || | || | | |||| | | || | || | Sbjct 5015 GTCCGAGGTCGCCAACTTCCCGCGACTGCAGTCCTCGACTGTCCAGATACTCCCGCGATC 5074 Query 25883 CATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTC 25942 ||||| |||||||||| | | ||||||| ||| | | | ||| || | Sbjct 5075 CATTGCCGTCCCAGATGTGGATATCCTTCTCCTGCAGCGTGTGCGCACTCGTGTCGCCAC 5134 Query 25943 TGACGAACCACAGCAGCTCCGCCG 25966 ||| |||||||||||||||| ||| Sbjct 5135 TGATGAACCACAGCAGCTCCTCCG 5158 >seq760 Length=24494 Score = 93.3 bits (102), Expect = 3e-14 Identities = 204/306 (67%), Gaps = 0/306 (0%) Strand=Plus/Plus Query 40691 GTCCACCTCCAGAACGGGAGGAGACTCGTACCTCTCGAGCACGAGCTGGGCTATCCTGTC 40750 |||||||||| | | || ||||| | ||||||| | |||||| || | | ||| Sbjct 7032 GTCCACCTCCTGGATCTCCGGGTACTCGATCTTCTCGAGGATGAGCTGCGCCACGCGGTC 7091 Query 40751 GCCCCTCTCGACCCGAAAAGGGTCGCACCCAAAGTTAAACAATATGACGCCGAGGTTGCC 40810 || | || ||| | || ||| | | ||| |||| || ||||| | |||||| Sbjct 7092 TCCGCGCTTGACGGGGAAGTCCTCGGCCGCGTGGTTGAACAGGATCACGCCCACGTTGCC 7151 Query 40811 CCTGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATTTTCCAGGGCCAGGCC 40870 | |||||||| ||| | ||| ||||| || ||| || || || | || || || || Sbjct 7152 GCGGTAGTCGGCGTCGATCACGCCGGCGCCCGTGTCGATGAACTTCTTGAGCGCGAGTCC 7211 Query 40871 GGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTTACGGCCAGGTCCGTCTT 40930 ||| | || ||||| | ||||| ||| ||| | | | ||||||||||||| Sbjct 7212 GGAGCGCGGCGCCACGCGCGCGTAGCAGCCGTCGGGTACGGCGATGACCAGGTCCGTCTT 7271 Query 40931 TACCAGGGCCCTGCCAAAGGAGGGGACCACGACCGGGTAAGCGGCCGCTAGGTCGTAACC 40990 || ||| || |||| | ||||| |||| | |||||| |||| ||||| ||| Sbjct 7272 GACGAGGCCCTTGCCGCCCGCGGGGATCACGGCGTCGTAAGCAGCCGACAGGTCCAGACC 7331 Query 40991 CGCGGC 40996 |||||| Sbjct 7332 CGCGGC 7337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340102181471712