Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_006151.1 Length=143461 Score E Sequences producing significant alignments: (Bits) Value seq1191 107 2e-18 >seq1191 Length=17317 Score = 107 bits (118), Expect = 2e-18 Identities = 261/388 (67%), Gaps = 12/388 (3%) Strand=Plus/Minus Query 94088 CCCCAGAGCATGAACACCAGCTTGGGGCGGGTCTCGCAGAGCCGCTGGACGACGGCGCGC 94147 |||||||||| |||||| | |||| || || || || || ||||||| Sbjct 6618 CCCCAGAGCAGGAACACGACGTTGGAAGCTTCCTTGCTGACCCTGGAGATGACGGCGTCT 6559 Query 94148 ACGAGCCGCGCCCAGCCGAGCGGGGCGTGGGAGCCGGGGACCCCGCGCCGCACGGTCAGC 94207 || | || |||||||| || ||| ||| || | || || || ||||| ||| Sbjct 6558 GTGAACTGCTCCCAGCCGCGCTTCTTGTGCGAGTTGGCCTCTCCTCGACGGACGGTAAGC 6499 Query 94208 GTCGTGTTCAGCAGCAGCACCCCGCGGCGCGCCCAGGCCTCCAGGCAGCCGTGGGCGGGC 94267 ||||| ||||||||||| || | || |||| || ||||||||||| ||| Sbjct 6498 ACAGTGTTGAGCAGCAGCACGCCCTGTCGACTCCAGCAAGACAAGCAGCCGTGGGTGGG- 6440 Query 94268 GCGGGCAGCGTCGGGTACGTCGCCCG-GACCGCCGCGAAGATGTTGGCCAGGCTCGGGGG 94326 ||| ||| | | |||||| | | || || ||||||||| ||||| || || Sbjct 6439 GCGCGCAATGCCC---ACGTCGTTCATGGCCTCCTTGAAGATGTTCTTGAGGCTGGGCGG 6383 Query 94327 GATCGGCACCCCGCGCCGGACGCTGAAGGCCAGCCCGTGGGCCTGGCCCGGCCCGTGGTA 94386 ||| || ||| | || || ||| ||| ||||| ||||| |||||||||||| Sbjct 6382 CGGCGGGACTCCGTGGCGCACCGAGAAACTCAGTCCGTGAGCCTGCTGCGGCCCGTGGTA 6323 Query 94387 CGGGTCCTGGCCGATGATGACCACCTTGACGTCCTCG--GGCGCCGTGAGGC-GCGTCCA 94443 |||||||||||| | || |||||||||| ||| | ||||| || || ||| | Sbjct 6322 CGGGTCCTGGCCCAGAATCACCACCTTGAGGTCGGAGAAGGCGCAGTCTCGCAGCGCC-- 6265 Query 94444 GGCGAACACGTCCTCGCGC-GCGGGCAG 94470 |||||||||||| || || ||||| || Sbjct 6264 -GCGAACACGTCCGCGGGCGGCGGGTAG 6238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 458898184439040