Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq62 145 1e-30 seq4196 140 5e-29 seq100 127 3e-25 >seq62 Length=73007 Score = 145 bits (160), Expect = 1e-30 Identities = 180/244 (74%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | || ||||| || |||||||| || ||||||||||| || | Sbjct 1318 CGCCAAGCGTCACCGCAAGGTC-CTTCGCGACAACATCCAGGGCATCACCAAGCCTGCCA 1376 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| || || |||||||| || |||||| |||| || | |||| || |||| Sbjct 1377 TCCGTCGTCTCGCACGCCGTGGTGGTGTGAAGCGTATCTCCGGCCTCATCTACGAGGAGA 1436 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| | |||||| ||| ||| |||| || | || ||| || | Sbjct 1437 CCCGCGGTGTCCTCAAGGTGTTCCTCGAGAACGTCATCCGCGACTCGGTCACCTACACTG 1496 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| || || ||||| || ||||||| |||| || || | || || || | Sbjct 1497 AGCACGCTCGCCGCAAAACTGTGACGGCCATGGACGTCGTGTACGCCCTCAAGCGCCAGG 1556 Query 16671 GCCG 16674 |||| Sbjct 1557 GCCG 1560 >seq4196 Length=3513 Score = 140 bits (154), Expect = 5e-29 Identities = 179/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 |||||||||||| ||| || || ||||| || |||||||| || ||||||||||| || | Sbjct 1344 CGCTAAGCGTCACCGCAAGGTC-CTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 1402 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| || |||||||| || || |||||| |||| || | |||| || |||| Sbjct 1403 TCCGTCGTCTCGCACGTCGTGGCGGTGTGAAGCGTATCTCCGGCCTCATCTACGAGGAGA 1462 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| | |||||| ||| ||| |||| || | || || || | Sbjct 1463 CCCGCGGTGTCCTCAAGGTGTTCCTCGAGAACGTCATCCGCGACTCGGTCACTTACACGG 1522 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| || || || ||||| ||||||| |||| || || | || || || | Sbjct 1523 AGCACGCTCGCCGCAAAACCGTCACTGCCATGGACGTCGTGTACGCTCTCAAGCGCCAGG 1582 Query 16671 GCCG 16674 | || Sbjct 1583 GACG 1586 >seq100 Length=61282 Score = 127 bits (140), Expect = 3e-25 Identities = 176/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| || ||||| |||| | || ||||| || |||||||| || ||||||||||| || | Sbjct 35024 CGCCAAACGTCACCGCAAGGTC-CTTCGTGACAACATCCAGGGCATCACCAAGCCGGCCA 34966 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| ||||||||||| || || ||||| ||||||| | |||| || |||| Sbjct 34965 TCCGCCGTCTCGCTCGTCGTGGCGGTGTGAAGCGCATCTCTGGCCTCATCTACGAGGAGA 34906 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| ||||||| | | ||| |||| || | || || || | Sbjct 34905 CGCGCGGCGTGCTCAAGGTCTTCCTGGAAAACGTCATCCGCGACTCCGTCACGTACACGG 34846 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| || || ||||| || ||||||| |||| || || | || ||||| | Sbjct 34845 AGCACGCTCGTCGCAAAACTGTGACGGCCATGGACGTCGTGTACGCGCTCAAGCGTCAGG 34786 Query 16671 GCCG 16674 | || Sbjct 34785 GACG 34782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79067388160992