Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1232 345 1e-89 >seq1232 Length=16645 Score = 345 bits (382), Expect = 1e-89 Identities = 1134/1735 (65%), Gaps = 43/1735 (2%) Strand=Plus/Minus Query 363445 GTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTT 363504 || || || |||||||| ||| | ||||| || || |||| ||||| | || Sbjct 2089 GTGGAGCGTCCGCAGCAAATGATTATGCGCGTGGCACTTGGCATCCACAAGAGCAACATT 2030 Query 363505 GATGCCGCGATTGAAACATATAAGCTTCTAAGT-GCTCGTGTATT-CACGCACGCCACGC 363562 | ||||| | || || || ||||| | || || ||| || |||||| ||||| | Sbjct 2029 GCGGCCGCCCTGGAGACGTACGAGCTTAT--GTCGCAAATGTTTTTCACGCATGCCACCC 1972 Query 363563 CAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAA 363622 | ||| | | || || || || | ||||| |||| |||||||| || | | Sbjct 1971 CGACACTTTTTAACGCCGGCACGCCGCGCCCACAACTGTCGTCTTGCTTCCTATTGGCCA 1912 Query 363623 TGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCA 363682 || | ||||| || || || || || | ||||| | ||| | ||||| ||| || | Sbjct 1911 TGCAAGACGACTCAATTGAAGGCATTTACGACACGTTAAAGCAATGTGCCTGTATCTCTA 1852 Query 363683 AGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTC 363742 | || || || ||||| | || ||||| | || || ||||| ||||| | Sbjct 1851 AATGGGCCGGAGGTATTGGCATCAGTATGCACAACATCCGAGCCACCAACAGCTACATCC 1792 Query 363743 GCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTG 363802 | ||||| || | || ||||| | | |||||||| || |||||| || | || | Sbjct 1791 GAGGCACGAACGGCTCGTCCAATGGCATCATCCCCATGCTGCGGGTGTTTAACGACACCG 1732 Query 363803 CGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGC 363862 || ||||||| |||||||| ||||| ||||| || || | || || || ||| | |||| Sbjct 1731 CGCGGTACGTGGACCAGGGCGGAGGCAAGCGTAAGGGCTCCTTCGCCATCTATTTGGAGC 1672 Query 363863 CTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAAT 363922 || || || ||| | || ||||| | || ||||| || ||| || || ||| | Sbjct 1671 CTTGGCACGCAGATGTGTTCGAGTTCTTGGACCTCCGTAAGAACCACGGCAACGAG---T 1615 Query 363923 TGC---GTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCG 363979 ||| | || || || |||||||| || |||||||| |||| | || |||||| | | Sbjct 1614 TGCACCGCGCTCGCGACCTGTTCTACGCCCTTTGGGTGCCTGATCTGTTCATGAAGAGGG 1555 Query 363980 TGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATG 364039 |||| || | || ||| |||| |||||| |||| || || || | || Sbjct 1554 TGGAAGCCAATGGCAAGTGGAGTCTCTATTGCCCTAACGAGGCCCCTGGACTCTATGAGT 1495 Query 364040 TATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTA 364099 ||||| ||||| | | || || || |||||||| || |||||||| || || | Sbjct 1494 GCTGGGGCGACGAATTCGAGGCCCTCTATGAAAAGTACGAGACGGAGGGACGCGCCCGCA 1435 Query 364100 AGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAA 364159 |||| || ||| ||| |||| ||||| ||||| |||| | ||||||||||| ||| Sbjct 1434 AGACGATCAACGCCCAGCAGCTGTGGTTCGCCATATTGGACGCCCAGATTGAGACGGGAG 1375 Query 364160 CACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTA 364219 |||| |||||||||||| || || |||||||||||| |||||| || |||| || | Sbjct 1374 TGCCCTTTATGTTGTACAAGGACGCGGCCAACCGCAAGTCGAACCAGAAGAACCTCGGCA 1315 Query 364220 CAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTG 364279 | || | |||||| |||| ||| | || || ||||| | || |||||| | Sbjct 1314 CGATCCGCTCCAGCAACTTATGCTGTGAGGTGATGGAGTACACGTCGCCGGACGAGGTGG 1255 Query 364280 CCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGATGGTACTTTTGACC 364339 | || || ||| | ||||| | ||||| || ||| || | || || ||| || Sbjct 1254 CTGTGTGCAACTTGGCGTCTGTGGCGCTGCCTAAGTTCGTGGAGGAAGGAGTTTTCAACT 1195 Query 364340 ACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACA 364399 ||||| | | ||||| || || | | || |||| | ||||||| |||||| Sbjct 1194 ACCAGAAGTTGTATGAAGTGACGAAGGTGGTCACCCGCAACTTAAACAAGGTCATCGACG 1135 Query 364400 AGAATTATTATCCAATTCCTGA---AGCCGAGC-GTTCTAATATGCGTCATCGCCCGATT 364455 || || || || | ||| || || || || || |||||||| ||||| || Sbjct 1134 TCAACTACTACCC----CGTGATCGAGGCGCGCAAGTCCAACATGCGTCACCGCCCCATC 1079 Query 364456 GGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCG 364515 ||| |||| || ||||||||||| |||| ||||| | | || || || || | Sbjct 1078 GGTATTGGCGTCCAGGGCCTCGCGGACGCGTTTATCCTCATGAACTACGCGTTCGA-GAG 1020 Query 364516 CCTG-ACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGAC 364574 | | | || || | || || ||| | ||||| || || || || || ||||| ||| Sbjct 1019 CGAGAAGGCCCGGGAGCTCAACAAGAACATCTTCGAGACCATCTACTTCGCCGCCATGGA 960 Query 364575 TGCTTCGTGTGATTTGGCAAA--AACCAAGGGAAAGTACTCTACTTATGAGGGGTC-CCC 364631 | ||| || | || || ||| || |||| || | |||| || ||| Sbjct 959 GACGTCGATGGAGATCGCCAAGGAAC--TCGGCCCGTACGAGACGTTCCAGGGCTCGCCC 902 Query 364632 TCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCG----AT 364687 || | |||| | |||||||| || | ||| ||||| || || ||| | | Sbjct 901 GCTAGC-AAGGGCATCTTCCAGTTCGACATGTGGGGCGTCACCCCGTC-GTCGGGTATGT 844 Query 364688 GGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACT-CGCAACTCCCTCGTT 364746 ||||||||| |||||| |||| | ||||| || ||| |||||||| || | Sbjct 843 GGAACTGGGCTACGCTCAAGGAGGACGTGATCAAGCACGG-ACTCCGCAACTCGCTGCTG 785 Query 364747 ACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAA 364806 || |||||||| |||||||| || || |||||||| ||||||||||||| |||| Sbjct 784 GTGGCCCCCATGCCGACGGCTTCCACGGCCCAGATCCTTGGAAACAACGAGTCTATCGAG 725 Query 364807 CCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAAT 364866 |||| || ||| | || ||||| || || | ||||| || || | || || Sbjct 724 CCGTACACGTCCAACATGTACAACCGCCGAGTGCTGGCTGGAGAGTTCACGATCGTCAAC 665 Query 364867 AAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAG-CATGAAGAACTA 364925 |||||||| | ||||| || ||| | ||| | | || | | | | || ||| | Sbjct 664 AAGTACCTGATGAAGGAGCTGATCGAGCTCGGCATCT-GGACGCCGGACGTGCGCAACCA 606 Query 364926 TATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGG-ATTTCCAGAAGATCTGAAGC 364984 ||| | || | || || ||||||||| || ||| | || || | | ||| Sbjct 605 GATCTTGAACGACAGCGGCTCCGTGCAGAAC-GTCAAGGCGATCCCGGACCACGTCAAGG 547 Query 364985 CTATTTACAAAACCGTATGGGAAATTTCCATGC-GAA--CTCTCATTGATATGGCGGCCG 365041 | ||||| || || ||||| || || || ||| | | | || || |||||| Sbjct 546 AGAAGTACAAGACGGTGTGGGAGAT---CAAGCAGAAGGCGGTGCTGGACCTGTCGGCCG 490 Query 365042 ATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCT 365101 | |||||||| | || || ||||| |||||| | ||| | ||| | | || ||| Sbjct 489 ACCGCGGTGCGTACATTTGCCAGAGTCAGTCGCTCAACATCCACATCGCCGACCCGACCA 430 Query 365102 CCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 | |||||| || || ||||| ||||||| ||||| || || ||||| || Sbjct 429 TCAGCAAGCTCACGTCGATGCACTTCTACGCCTGGAAGAAGGGGCTCAAGACCGG 375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303210921881408