Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq8081 122 6e-23 seq6020 122 6e-23 seq8264 107 1e-18 >seq8081 Length=1584 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| ||||||||| ||||||||||| || |||||| | Sbjct 600 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCAT 659 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||| ||||||||||| Sbjct 660 TAATCCATTCATGCGCGTCACTAGTTAGATGACGA 694 >seq6020 Length=1654 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| ||||||||| ||||||||||| || |||||| | Sbjct 700 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCAT 641 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||| ||||||||||| Sbjct 640 TAATCCATTCATGCGCGTCACTAGTTAGATGACGA 606 >seq8264 Length=1316 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||| Sbjct 1126 CTCTCTTTTCAAAGTTTTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 1067 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 1066 ACCAATATTTAGCTTTA 1050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334912321948064