Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq326 203 7e-47 seq6666 167 5e-36 seq92 127 4e-24 seq347 105 1e-17 seq210 87.8 4e-12 seq8522 84.2 4e-11 seq8449 84.2 4e-11 >seq326 Length=38572 Score = 203 bits (224), Expect = 7e-47 Identities = 662/1011 (65%), Gaps = 37/1011 (4%) Strand=Plus/Plus Query 279361 ACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACA 279420 |||| || ||||||||||| || ||||| | ||||||||| ||| |||| || | Sbjct 24878 ACTGCGAGTTCTCGCTCGCTTACGGTGGTATGATTCTGCTGAACAACGCCCGTCTTCGCC 24937 Query 279421 TCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAA 279480 ||||||||||| |||| || ||||| ||||||||| || |||||| || || | Sbjct 24938 TCAAGCGTGGCCACCGTTACGGTCTGTGCGGTCCCAACGGTTGTGGTAAGTCGACGCTGA 24997 Query 279481 TGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCATCTGAGGTAAGGACAG 279540 ||||||||||||| ||||| ||||| || || || || | | ||| | | ||| | Sbjct 24998 TGCGCGCCATTGCCAACGGCCAGCTCGAGGGCTTCCCCAGCAAGGACGAGCTGAAGACTG 25057 Query 279541 TGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCACTGTGTTCGACTTCCTAA 279600 ||| || |||||| || | | | || | || || ||| | |||||| | Sbjct 25058 TGTTCGTCGAGCACAACCTGCAGGCTTCGGAGGCTGAGCTTACGGTGGTTGACTTCATCC 25117 Query 279601 CGTCTGACAATCAGGTTATGGAAATCAGCTCTCCTGAGGAAATCATCCAGAAACTGGAGG 279660 | ||| | | | | ||| || | ||| |||| | | || || || Sbjct 25118 TGATTGATGACGACCTGAAGGA---CACCCCTCGCAAGGAGGT--TGAGGACGCTCT-GG 25171 Query 279661 CCAATG--GTTTTGATGAAAGA-ATGCGTAATCTGCCAGTAGGTTCTCTGTCGGGTGGTT 279717 | ||| | || | || |||| || | | || || || || || ||||||| Sbjct 25172 CTGATGTCGGCTTCACCGCCGAGATGCAGGCTCAGGCTGTGGGCTCCCTTTCTGGTGGTT 25231 Query 279718 GGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATGTCCTACTGCTTG 279777 |||||||||| || | || | || || || || ||| || || | || ||||||| Sbjct 25232 GGAAGATGAAACTCGAGCTGTCGCGTGCTATGCTGCTGAAGGCTGACATTCTGCTGCTTG 25291 Query 279778 ATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGTCCTACCTAACCA 279837 ||||||| || |||||| |||| || ||||| |||||||| | | |||||| || | Sbjct 25292 ATGAGCCGACAAACCACTTGGATGTCAAGAACGTCGCCTGGCTTGAGAACTACCTGACGA 25351 Query 279838 GTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCCTAGATGCCGTGT 279897 | || || ||| | ||| |||| || || ||||||||||||||||| || ||||| Sbjct 25352 GCGTGCCGACTGTCACCTCCATCATGGTGTCCCACGACTCTGGCTTCCTTGACAACGTGT 25411 Query 279898 GCTCTGCCATCATTCACTATGAG---CAAAATCTGAAGCTCTCCAAGCACATCGGCAACC 279954 | | |||||| ||||| ||| | || |||||| ||| |||| ||||||| Sbjct 25412 GTACCAACATCATCCACTACGAGACCCGTAAGCTGAAGATCTACAAG------GGCAACC 25465 Query 279955 TGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTATGACCTGAAGGACGCCA 280014 | ||| ||||| | || || ||||| |||||||| || ||| || | || Sbjct 25466 TTTCTCTCTTCGTTGAGCAGAAGCCCGAGGCCAAGGCCTACTACGAGCTGGAGTCGGACA 25525 Query 280015 CCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCATC-ACATCAAAGGATCGC 280073 || |||| ||||| ||||| || || || | | |||| | | ||| || || Sbjct 25526 ACGTGAAGTTCACGTTCCCGGAGCCTGGTTTCCTTGCTGACATCAAGAACAAGGGTAAGC 25585 Query 280074 GCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAATGG--CCCCAACATCTTC- 280130 | ||||| || | ||| | || || ||| |||| | | || Sbjct 25586 -CCATCATTCGTCTGACCAACTGCTCGTACCAGTACCC---TGGTACCCCGAAGCCGTCG 25641 Query 280131 AGCAGTGTCAACTCG--CAGGT---TTCTAT-GAACTCACGGATTGGTGTCATTGGACCC 280184 | || || |||| | || ||| | || | || || | ||| |||| ||| Sbjct 25642 ATCAACAACATCTCGGTGACGTGCGCTCTGTCGAGC---CGTATCGCTGTGCTTGGCCCC 25698 Query 280185 AATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCCACTGAG 280244 || ||||| |||||||| || || ||||| | ||||| || ||| || | || ||| Sbjct 25699 AACGGTGCCGGTAAGTCGACGCTGATCAAGATGCTGACGGGTGAGGTGGAGCCGAC-GAG 25757 Query 280245 GGGTC-CGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTTCCA 280303 |||| || |||||||| || |||||| | || ||||| ||||||||||||||||| Sbjct 25758 CGGTCAGGTGTGGAAGCACCCTTCCATGCGTTTCGCCTACGTGGCTCAGCACGCTTTCCA 25817 Query 280304 CCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCG 280354 |||||| ||| ||||| ||| ||| | ||||| ||||| |||||||| Sbjct 25818 CCACATTGAGTCGCACCTCGACGAGACGGCCAACCAGTACATCCAGTGGCG 25868 >seq6666 Length=2405 Score = 167 bits (184), Expect = 5e-36 Identities = 564/858 (66%), Gaps = 23/858 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 ||||| || || | |||||||| ||| ||||| | ||||| ||||||| ||||| | Sbjct 1445 TCGAAAAAGTTCGTCTTGCCCTGCAGCGAGATCATGTCCATCCAGTCGAACGGGTTCTTT 1504 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGC-TAC-GAAGATGCGGTCTGCCACAAACTCCA 251680 | ||||| ||| | || || | ||| | ||| ||||| ||||| ||||| | Sbjct 1505 ACGTTGTAGATCTTCGACACACCCAGCGAGTACAGCAGA--CGGTCGGCCACGAACTCGA 1562 Query 251681 GATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAG 251739 ||||| | ||| || | ||||||||||| |||| | ||| ||| | |||| Sbjct 1563 TGTACTGGCACATGAGCCCCGAGTTCATGCCGATCAGCTCCACAGGGAGC-GAGTCACGC 1621 Query 251740 ATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGAC 251799 | ||| || | ||| | | || || || ||| || | | ||| | | | | Sbjct 1622 ACGAACTCGTGCTCGATCGTCACCGCGTCGCGCACGATCTCGTGCACGCGGCTCTCCGGC 1681 Query 251800 AGCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAA-CTGTTGGTGCAGACCCTCGT 251857 ||||||||| ||||||| ||||||| ||| | ||| || | || ||||| ||||||| Sbjct 1682 AGCTTGTTCACCAGCTTGGAGTACATGAGGCACGCGAAGTCCGT--GTGCATGCCCTCGT 1739 Query 251858 CGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCC 251917 | || ||||| | |||||| || | | |||||||||||| | || || ||| |||||| Sbjct 1740 CACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGAGCC 1799 Query 251918 AGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAA 251977 ||||||| | ||| || || || ||||| | | ||||| ||| | | || | | Sbjct 1800 AGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCCACAGCTGCGAACGCCAGCA 1859 Query 251978 GGCGCTCAGCAAACGACTTGTCCTGCG---ACAAGAACTTCTGTGCCCA-TGCTGCCTTC 252033 | ||||| | ||||| | ||| | |||| | ||||| ||| || ||| Sbjct 1860 GACGCTCCGGGTACGACGACACTCGCGGGTCGCACCACTTGAGCGCCCAGTGC-GCTTTC 1918 Query 252034 TT-TCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTC 252092 || | || | | ||||| || ||||| ||| | || || | ||| | | || Sbjct 1919 TTCTTCACACAC-GGGATCGTATCGATGGCACGCAGCAGGTGGTCCTTCTCCGTCGCATC 1977 Query 252093 CTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACAT 252152 || |||| || |||| || || || |||| ||| || |||||| ||| || || Sbjct 1978 CTTGATGTACGTGTCAATGAGCAGCGAATACACCTCTGAGTGGATGTTCTCGATGGCGAT 2037 Query 252153 CTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTGC 252212 |||| || | ||||| || || || | ||||| || ||||| | || Sbjct 2038 CTGGAAACCGTAGAAGCAGCGGGCCTCCGGCACCTGCACTTCATTGCTGAAGTTCATGGC 2097 Query 252213 AATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAA 252272 | |||||| |||| ||||| |||||| | || |||||| | || | | ||||||||| Sbjct 2098 CAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGAAGAAGGCCAGCACGTGCTTGATGAA 2157 Query 252273 GTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGAAC 252332 | ||||| | ||| | || || | |||||| | ||| || ||| | Sbjct 2158 GAACCGCTCGTTGTCCGTCAGGTTCGC---CCAGTCCTTGAGGTCGTGCACCAGGTCCAG 2214 Query 252333 TTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT-TGCGAACACATCAGGGT 252391 || || |||||||||||| | | |||||||||||||||| ||| |||| || | | Sbjct 2215 CTCCTCGGCCGTCCAGAATGACGCCTCCGCCTTCTTGTACATCTGC-CACACGTCGTGCT 2273 Query 252392 ACTTGATTGGGAA-AGCA 252408 || ||| ||||| |||| Sbjct 2274 CCTGGATCGGGAACAGCA 2291 >seq92 Length=63871 Score = 127 bits (140), Expect = 4e-24 Identities = 408/619 (66%), Gaps = 17/619 (3%) Strand=Plus/Minus Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAA-CTGTTGGTGCAGACCCTCG 251856 |||||||||| ||||||| ||||||| ||| ||||| || | || ||||| |||||| Sbjct 49585 CAGCTTGTTCACCAGCTTGGAGTACATGAGGCTCGCGAAGTCCGT--GTGCATGCCCTCG 49528 Query 251857 TCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGC 251916 || || ||||| | |||||| || | | |||||||||| | | || || ||| ||||| Sbjct 49527 TCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCGTGAGGCCGCGCTTCTTGAGC 49468 Query 251917 CAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACA 251976 |||||||| | ||| || || || ||||| | | ||||| || | | | | Sbjct 49467 CAGAAGATCGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCCACGGTTGCGAACGTCAGC 49408 Query 251977 AGGCGCTCAGCAAACGACTTGTCCTGCG---ACAAGAACTTCTGTGCCCA-TGCTGCCTT 252032 | |||||| | ||||| | ||| | |||| | ||||| ||| || || Sbjct 49407 ACGCGCTCCGGGTACGACGACACTCGCGGGTCGCACCACTTGAGCGCCCAGTGC-GCTTT 49349 Query 252033 CTT-TCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGT 252091 ||| | || | | ||||| || ||||| ||| | || || | ||| | | | Sbjct 49348 CTTCTTCACACAC-GGGATCGTATCGATGGCACGCAGCAGGTGGTCCTTCTCCGTCGCAT 49290 Query 252092 CCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACA 252151 ||| |||| || |||| || || || |||| ||| || |||||| ||| || | Sbjct 49289 CCTTGATGTACGTGTCAATGAGCAGCGAATACACCTCTGAGTGGATGTTCTCGATGGCGA 49230 Query 252152 TCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTG 252211 ||||| || | ||||| || || || | ||||| || ||||| | | Sbjct 49229 TCTGGAAACCGTAGAAGCAGCGGGCCTCCGGCACCTGCACTTCATTGCTGAAGTTCATGG 49170 Query 252212 CAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGA 252271 | | |||||| |||| ||||| |||||| | || |||||| | || | | |||||||| Sbjct 49169 CCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGAAGAAGGCCAGCACGTGCTTGATGA 49110 Query 252272 AGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGAA 252331 || ||||| | ||| | || || | |||||| | ||| || ||| | Sbjct 49109 AGAACCGCTCGTTGTCCGTCAGGTTCGC---CCAGTCCTTCAGGTCGTGCACCAGGTCCA 49053 Query 252332 CTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT-TGCGAACACATCAGGG 252390 || || |||||||||| | || | |||| ||||||||||| ||| |||| || | Sbjct 49052 GCTCCTCGGCCGTCCAGAACGAGGCCTCCGCTTTCTTGTACATCTGC-CACACGTCGTGC 48994 Query 252391 TACTTGATTGGGAA-AGCA 252408 | || ||| ||||| |||| Sbjct 48993 TCCTGGATCGGGAACAGCA 48975 >seq347 Length=38231 Score = 105 bits (116), Expect = 1e-17 Identities = 128/172 (74%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 218656 AAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAG 218715 ||||| || || || |||||||||| || || || | ||||||||||| |||||| Sbjct 27614 AAGGTGGCACAATTGGCTGGTTATGTGTCAGAGCACTCCGCGTACCATCACGGCGAGCAG 27555 Query 218716 AGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAAC 218775 ||| ||||||| || || |||||| ||||||| ||| || || |||||||| || Sbjct 27554 AGTTTGCAGGGCTGTATCGTCAACATGGCTCAGGACTTTGTCGGAAGCAACAACATCCAC 27495 Query 218776 TTGCTGCTCCCCAA-CGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGAT 218826 | ||| || |||| ||||||||| ||| | ||| | |||| || |||||| Sbjct 27494 CTCCTG-TCGCCAATCGGTCAGTTCGGTACGCGTTTGATGGGCGGCAAGGAT 27444 >seq210 Length=64616 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 280713 ATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAA 280772 || |||||||| || || |||||||||||||| || ||||||| || || ||||| | Sbjct 53069 ATCCGCGGTCTCTCGGGCGGCCAGAAGGTCAAGCTCGTCATCGCTGCTGCCATGTGGAAC 53128 Query 280773 CACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGC 280832 | || ||| || | || || || ||||| || ||||| ||||||||| | |||||| Sbjct 53129 CGTCCGCACTTGTTGGTGCTGGATGAGCCGACGAACTACTTGGACCGCGCGGCGCTGGGC 53188 Query 280833 GCTCTG 280838 || ||| Sbjct 53189 GCGCTG 53194 >seq8522 Length=1251 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||| ||||||||||||||||||||| | || |||| | |||||||||||||||||||| Sbjct 430 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 489 Query 142565 CCAC 142568 |||| Sbjct 490 CCAC 493 >seq8449 Length=2013 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||| ||||||||||||||||||||| | || |||| | |||||||||||||||||||| Sbjct 370 CCCGTCTAGCTCAGTCGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 311 Query 142565 CCAC 142568 |||| Sbjct 310 CCAC 307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027724282705504