Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq132 118 9e-22 seq570 104 2e-17 >seq132 Length=78195 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | || || | || | ||| || || || ||||||||||| |||||| Sbjct 55241 CCACCACGAAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 55182 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || ||| || ||||| || || |||||| |||| |||||||| ||||| || || Sbjct 55181 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 55122 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 ||||| || ||||| ||||| || || | | || | | ||| | | || ||| Sbjct 55121 ATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACG 55062 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 |||| || | ||| ||||| ||||| || || ||||| ||||||||| Sbjct 55061 TCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATG 55014 Score = 116 bits (128), Expect = 3e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 ||| || || || ||||||||||| ||||||| || ||| || ||||| || || || Sbjct 54756 CGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCAAGCTGCTTGCC 54697 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 |||| |||| |||||||| ||||| || || ||||| || ||||| ||||| || || Sbjct 54696 AGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTT 54637 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | || | | ||| | | || ||||||| || | ||| ||||| ||||| || Sbjct 54636 GACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGCGT 54577 Query 114365 TTTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 54576 CTTCACAAAGATCTGCATG 54558 Score = 116 bits (128), Expect = 3e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 ||| || || || ||||||||||| ||||||| || ||| || ||||| || || || Sbjct 54984 CGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCAAGCTGCTTGCC 54925 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 |||| |||| |||||||| ||||| || || ||||| || ||||| ||||| || || Sbjct 54924 AGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTT 54865 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | || | | ||| | | || ||||||| || | ||| ||||| ||||| || Sbjct 54864 GACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGCGT 54805 Query 114365 TTTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 54804 CTTCACAAAGATCTGCATG 54786 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 ||| || || || ||||||||||| ||||||| || ||| || ||||| || || || Sbjct 54528 CGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCAAGCTGCTTGCC 54469 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 |||| |||| |||||||| ||||| || || ||||| || ||||| ||||| || || Sbjct 54468 AGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTT 54409 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | || | | ||| | | || ||||||| || | ||| ||||| ||||| || Sbjct 54408 GACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGCGT 54349 Query 114365 TTTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 54348 CTTCACGAAGATCTGCAT 54331 >seq570 Length=29657 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || |||||||| || | || || | || | ||| || || || || |||||||| ||| Sbjct 28826 ATTCCGCCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCG 28767 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 |||| || ||| || || || || || || ||| ||||||| ||||| ||||| || Sbjct 28766 CTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGC 28707 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || ||||| |||||| || || | | || | | ||| | | || Sbjct 28706 GGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCC 28647 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| | || | || ||||| ||||| || || || ||||||||||| Sbjct 28646 ACGTCGAGTGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAAATCTGCAT 28597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420090651404928