Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq6666 401 1e-106 seq1232 358 1e-93 seq92 315 1e-80 >seq6666 Length=2405 Score = 401 bits (444), Expect = 1e-106 Identities = 616/870 (71%), Gaps = 25/870 (3%) Strand=Plus/Minus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| || | || ||| | ||| ||||||||||||||| || || |||||| || Sbjct 2281 GATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAGGCGTCATTCTGGACGGC 2222 Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAA 42403 ||||||| | ||||||| | ||| | ||||| | ||| | || ||||| Sbjct 2221 CGAGGAGCTGGACCTGGTGCACGACCTCAAGGACTGGGCGAACCTGACGGACAACGAGCG 2162 Query 42404 GTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAA 42463 ||| ||| |||| || | |||||||||||||| ||| |||||||| || || ||||| Sbjct 2161 GTTCTTCATCAAGCACGTGCTGGCCTTCTTCGCTGCCAGCGACGGCATCGTGAACGAGAA 2102 Query 42464 CCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTT 42523 |||||||| | |||| || || |||||| ||||| |||||||||||||| || Sbjct 2101 CCTGGCCATGAACTTCAGCAATGAAGTGCAGGTGCCGGAGGCCCGCTGCTTCTACGGTTT 2042 Query 42524 CCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTA 42580 |||||| ||||| |||||| | ||||| |||||||| | ||||||| ||||||| Sbjct 2041 CCAGATCGCCATCGAGAACATCCACTCAGAGGTGTATTCG---CTGCTCATTGACACGTA 1985 Query 42581 CATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCAT 42640 |||| |||| | ||| || ||| | ||||| || ||||| || || | Sbjct 1984 CATCAAGGATGCGACGGAGAAGGACCACCTGCTGCGTGCCATCGATACGATCCCGTGTGT 1925 Query 42641 CAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGA-----GAGTCCCGACGCAACGTTC 42695 |||||||| ||| ||||||||||||| ||| ||| |||| || || | | | Sbjct 1924 GAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGAGTGTCGTCGTACC---C 1868 Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 | ||| | ||| | || || | || || ||||||||||||||||||||| | ||| | Sbjct 1867 G--GAGCGTCTGCTGGCGTTCGCAGCTGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGC 1810 Query 42756 TCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 |||||||||||||||||| || || || ||||| || || | |||||||||||| || Sbjct 1809 TCCATCTTCTGGCTCAAGAAGCGCGGCCTC-ATGCCTGGCCTGAGCTTCTCGAACGAGCT 1751 Query 42815 CATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCT 42874 |||||| | |||||||| |||| | |||||| || |||||| ||| ||| | | || Sbjct 1750 GATCAGCCGTGACGAGGGCATGCACACGGACTTCGCGTGCCTCATGTACTC---CAAGCT 1694 Query 42875 CAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGA 42934 | |||||| || || || || | | ||| | || || ||| |||||| Sbjct 1693 GGTGAACAAGCTGCCGGAGAGCCGCGTGCACGAGATCGTGCGCGACGCGGTGACGATCGA 1634 Query 42935 GAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCAT 42994 | | |||||| | | ||||| || ||| ||| ||||||||||| | ||||| Sbjct 1633 GCACGAGTTCGTGCGTGACTCGCTCCCTGTGGAGCTGATCGGCATGAACTCGGGGCTCAT 1574 Query 42995 GTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCG--C 43052 |||| |||||||| ||| ||| ||||||| ||| |||| | | ||||| | | || Sbjct 1573 GTGCCAGTACATCGAGTTCGTGGCCGACCGTCTGCTGTACTCGCTGGGTGT--GTCGAAG 1516 Query 43053 CTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACC 43112 |||||||| | ||| ||||||| ||||| | |||||| || |||||||||| Sbjct 1515 ATCTACAACGTAAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAGACG 1456 Query 43113 AACTTTTTCGAGAAGCGCGTCGCCGACTAC 43142 |||||||||||||||||||| | ||| ||| Sbjct 1455 AACTTTTTCGAGAAGCGCGTGGGCGAGTAC 1426 >seq1232 Length=16645 Score = 358 bits (396), Expect = 1e-93 Identities = 977/1487 (66%), Gaps = 62/1487 (4%) Strand=Plus/Plus Query 243775 CAGGTAGTACATGCCGGTCTTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAG 243834 || ||||||||||||||||||||| || | |||||||| || |||||| | ||| || Sbjct 362 CATGTAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGACGTGAG 421 Query 243835 CTTCTTCATCTTGAGCTTTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTG 243894 ||| | || | |||||| | | || |||||| ||||| ||||| Sbjct 422 CTTGCTGATGGTC------GGGTCGGCGATGTG------GATGTTGAGCGACTGACTCTG 469 Query 243895 GTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATA 243954 | | | | | | || || || | || | | | ||||||| ||||| | Sbjct 470 GCAAATGTACGCACCGCGGTCGGCCGACAGGTCCAGCACCGCCTTCTGCTTGATCTCCCA 529 Query 243955 CGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCC 244014 | |||||||||| | ||||| ||| || |||| | | | || ||||||||| ||||| Sbjct 530 CACCGTCTTGTACTTCTCCTTGACGTGGTCCGGGATCGCCTTGACGTTCTGCACGGAGCC 589 Query 244015 CTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTC---CAG 244071 ||| | | || |||| |||||| || |||| | ||| | |||| ||| Sbjct 590 GCTGTCGTTCAAGATCTGGTTGCGCACGTCCGGCGTCCAGATGCCGA---GCTCGATCAG 646 Query 244072 CGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTA 244131 | ||| | ||||| | |||| || | | |||||||| | |||||| ||||| | ||| Sbjct 647 CTCCTTCATCAGGTACTTGTTGACGATCGTGAACTCTCCAGCCAGCACTCGGCGGTTGTA 706 Query 244132 GAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGC 244191 | |||| || ||||||||| ||| |||| || || ||||| |||||| || Sbjct 707 CATGTTGGACGTGTACGGCTCGATAGACTCGTTGTTTCCAAGGATCTGGGCCGTGGAAGC 766 Query 244192 AGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATG-CGGAGTC 244250 ||||||||||| | ||||||||| ||| | | |||||| | ||| || || Sbjct 767 CGTCGGCATGGGGGCCACCAGCAGCGAGTTGCGGAGTCCGTGCTT---GATCACGTCCTC 823 Query 244251 --TGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTC 244308 ||||| ||||| |||||| ||||| | || | | || |||||||||||| Sbjct 824 CTTGAGCGTAGCCCAGTTCCACATACCCGA-----CGACGGGGT-GACGCCCCACATGTC 877 Query 244309 AAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCG 244368 ||||| | | |||||||| |||| ||||| | | ||| ||| || ||| Sbjct 878 GAACTGGAAGATGCCCTTGCTAGCGGGCGAGCCCTGGAACGTCTCGTACGGGCCGAGTTC 937 Query 244369 CTGGGCCAGCTTACAGCT-CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCT 244427 || ||| | || || | | || | ||||||| ||||||||||||||||||| ||| Sbjct 938 CTTGGCGATCTC-CATCGACGTCTCCATGGCGGCGAAGTAGATGGTCTCGAAGATGTTCT 996 Query 244428 TGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGG 244487 |||| | || |||||||| ||| ||| | | | ||| | || || |||| | Sbjct 997 TGTTGAGCTCCCGGGCCTTCTCGCTCTCGAACGCGTAGTTCATGAGGATAAACGCGTCCG 1056 Query 244488 CCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGA---GCGCATGGCTT 244544 | || ||||| ||||| || |||||||| | ||| ||| ||||||| |||| || | Sbjct 1057 CGAGGCCCTGGACGCCAATACCGATGGGGCGGTGACGCATGTTGGACTTGCGC---GCCT 1113 Query 244545 CGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCA--TGCG 244602 || ||||||||| ||||| ||||||| |||||||| | ||||||||||| || | || Sbjct 1114 CGATCACGGGGTAGTAGTTGACGTCGATGACCTTGTTTAAGTTGCGGGTGACCACCTTCG 1173 Query 244603 GACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCT 244662 || || || | ||| ||| | | | |||| |||| Sbjct 1174 --TCACTTCATACAACTTCTGGTAGTTGAAAAC-------TCCT------------TCCT 1212 Query 244663 -CACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGG 244721 ||| |||| || || || |||| |||||| || |||||||| |||| | Sbjct 1213 CCACGAACTTAGGCAGCGCCACAGACGCCAAGTTGCACACAGCCACCTCGTCCGGCGACG 1272 Query 244722 TGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGAT 244781 |||||| | | ||| ||| | ||| ||| | ||| ||||| |||| || || | Sbjct 1273 TGTACTCCATCACCTCACAGCATAAGTTGCTGGAGCGGATCGTGCCGAGGTTCTTCTGGT 1332 Query 244782 TGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGG 244841 | |||||| |||| ||||||||||| | ||| |||||| | || ||||| | ||||| Sbjct 1333 TCGACTTGCGGTTGGCCGCGTCCTTGTACAACATAAAGGGCACTCCCGTCTCAATCTGGG 1392 Query 244842 CGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTG 244901 || | | | | | ||| || | | || |||| |||| |||| || ||||| | Sbjct 1393 CGTCCAATATGGCGAACCACAGCTGCTGGGCGTTGATCGTCTTGCGGGCGCGTCCCTCCG 1452 Query 244902 CCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGC 244961 |||||| || ||||||||||| ||| ||||||| ||| | || || ||| Sbjct 1453 TCTCGTACTTTTCATAGAGGGCCTCGAATTCGTCGCCCCAGCACTCATAGAGTCCAGGGG 1512 Query 244962 ACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGT 245021 | ||||| ||||||||||| ||| | | | ||||||| |||||| || | Sbjct 1513 CCTCGTTAGGGCAATAGAGACTCCACTTGCCATTGGCTTCCACCCTCTTCATGAACAGAT 1572 Query 245022 CGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCT 245081 | || | ||| ||||| | ||| ||||| | | | ||| || ||| ||||| Sbjct 1573 CAGGCACCCAAAGGGCGTAGAACAGGTCGCGAGCGCGGTGCAACTCGTTGCCGTGGTTCT 1632 Query 245082 TCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGG 245141 | | || ||||| || || || || || ||||||| ||||||| |||| |||| || Sbjct 1633 TACGGAGGTCCAAGAACTCGAACACATCTGCGTGCCAAGGCTCCAAATAGATGGCGAAGG 1692 Query 245142 CGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCA 245201 ||| |||||| || ||||||||||| || | || |||| || | |||| Sbjct 1693 AGCCCTTACGCTTGCCTCCGCCCTGGTCCACGTACCGCGCGGTGTCGTTAAACACCCGCA 1752 Query 245202 GGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAG 245248 | | || | ||||| || || |||||| ||||| ||||||| Sbjct 1753 GCATGGGGATGATGCCATTGGACGAGCCGTTCGTGCCTCGGATGTAG 1799 >seq92 Length=63871 Score = 315 bits (348), Expect = 1e-80 Identities = 576/831 (69%), Gaps = 32/831 (4%) Strand=Plus/Plus Query 42229 GCGAGCTG---TTTGAGCCGCTCCTGGCGCCGAGCAACTCCA---GGTTCACCCTGGACG 42282 |||||||| | |||||| |||||| |||| ||| | | ||||| ||| | Sbjct 48927 GCGAGCTGCAGTCGGAGCCGTTCCTGGT--CGAG-AACCCGAACCGGTTCGTGCTGTTCC 48983 Query 42283 TGATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCG 42342 |||| || | || ||| | ||| ||||||||||| ||| || ||| |||||| | Sbjct 48984 CGATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAAGCGGAGGCCTCGTTCTGGACGG 49043 Query 42343 CCGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAA 42402 |||||||| | ||||||| | ||| | | ||||| | ||| | || ||||| Sbjct 49044 CCGAGGAGCTGGACCTGGTGCACGACCTGAAGGACTGGGCGAACCTGACGGACAACGAGC 49103 Query 42403 AGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGA 42462 ||| ||| |||| || | |||||||||||||| ||| |||||||| || || |||| Sbjct 49104 GGTTCTTCATCAAGCACGTGCTGGCCTTCTTCGCTGCCAGCGACGGCATCGTGAACGAGA 49163 Query 42463 ACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCT 42522 ||||||||| | |||| || || |||||| ||||| |||||||||||||| | Sbjct 49164 ACCTGGCCATGAACTTCAGCAATGAAGTGCAGGTGCCGGAGGCCCGCTGCTTCTACGGTT 49223 Query 42523 TCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGT 42579 ||||||| ||||| |||||| | ||||| |||||||| | ||||||| |||||| Sbjct 49224 TCCAGATCGCCATCGAGAACATCCACTCAGAGGTGTATTC---GCTGCTCATTGACACGT 49280 Query 42580 ACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCA 42639 ||||| |||| | ||| || ||| | ||||| || ||||| || || Sbjct 49281 ACATCAAGGATGCGACGGAGAAGGACCACCTGCTGCGTGCCATCGATACGATCCCGTGTG 49340 Query 42640 TCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGA-----GAGTCCCGACGCAACGTT 42694 | |||||||| ||| ||||||||||||| ||| ||| |||| || || | | Sbjct 49341 TGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGAGTGTCGTCGTACC--- 49397 Query 42695 CGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGC 42754 || ||| | || | | || | |||| ||||||||||||||||||||| | ||| Sbjct 49398 CG--GAGCGCGTGCTGACGTTCGCAACCGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTG 49455 Query 42755 CTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAAC 42813 ||| ||||||||||||||| || || || | ||| || || | |||||||||||| | Sbjct 49456 CTCGATCTTCTGGCTCAAGAAGCGCGGCCTC-ACGCCTGGCCTGAGCTTCTCGAACGAGC 49514 Query 42814 TCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACC 42873 | |||||| | |||||||| |||| | |||||| || ||||| ||| ||| | | | Sbjct 49515 TGATCAGCCGTGACGAGGGCATGCACACGGACTTCGCGAGCCTCATGTACTC---CAAGC 49571 Query 42874 TCAGGCACAAGCCCTCGAAGGAG-CGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATC 42932 | | |||||| || |||| || || | | ||| | || | ||| |||| Sbjct 49572 TGGTGAACAAGCTGCCG-GGGAGCCGCGTGCACGAGATCGTGCGCGACGGGGTGACGATC 49630 Query 42933 GAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTC 42992 ||| | |||||| | | ||||| || ||| | ||||||||||| | ||| Sbjct 49631 GAGCACGAGTTCGTGCGTGACTCGCTCCCTGTGGAGTCGATCGGCATGAACTCGGCGCTC 49690 Query 42993 ATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGT 43043 |||||| | |||||| ||| ||| ||||||| ||| |||||| | ||||| Sbjct 49691 ATGTGCCAATACATCGAGTTCGTGGCCGACCGTCTGCTGTGCTCGCTGGGT 49741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944238344573440