Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1033 96.9 3e-15 seq570 96.9 3e-15 seq760 87.8 1e-12 seq132 87.8 1e-12 >seq1033 Length=19618 Score = 96.9 bits (106), Expect = 3e-15 Identities = 92/115 (80%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || |||||||| || ||||||||||||||||| |||||||| || | Sbjct 11438 ACCACCACGCAGACGAAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCG- 11496 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || || |||| |||| ||||||||||| || |||||||||||||| || Sbjct 11497 AAAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 11551 >seq570 Length=29657 Score = 96.9 bits (106), Expect = 3e-15 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || ||||| ||||||||| |||||||| || || Sbjct 28823 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC-GCT 28765 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| |||| ||||||||||| || || ||||||||||| || ||| Sbjct 28764 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGG 28705 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| |||||| ||| || ||||| Sbjct 28704 GATGCCCTCCTTGTCCTGAATCTTCTGCTT 28675 Score = 96.9 bits (106), Expect = 3e-15 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || ||||| ||||||||| |||||||| || || Sbjct 29051 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC-GCT 28993 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| |||| ||||||||||| || || ||||||||||| || ||| Sbjct 28992 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGG 28933 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| |||||| ||| || ||||| Sbjct 28932 GATGCCCTCCTTGTCCTGAATCTTCTGCTT 28903 Score = 96.9 bits (106), Expect = 3e-15 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || ||||| ||||||||| |||||||| || || Sbjct 29279 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC-GCT 29221 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| |||| ||||||||||| || || ||||||||||| || ||| Sbjct 29220 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGG 29161 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| |||||| ||| || ||||| Sbjct 29160 GATGCCCTCCTTGTCCTGAATCTTCTGCTT 29131 Score = 96.9 bits (106), Expect = 3e-15 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || ||||| ||||||||| |||||||| || || Sbjct 29507 CCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC-GCT 29449 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| |||| ||||||||||| || || ||||||||||| || ||| Sbjct 29448 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGG 29389 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| |||||| ||| || ||||| Sbjct 29388 GATGCCCTCCTTGTCCTGAATCTTCTGCTT 29359 >seq760 Length=24494 Score = 87.8 bits (96), Expect = 1e-12 Identities = 190/277 (69%), Gaps = 8/277 (3%) Strand=Plus/Minus Query 39936 GCCGCGGGCATGGACCTGAGGAGCGCATACGACTACGTGATTCCTCGCAA-CGACCGAAT 39994 |||||||| |||||||| | || |||||| |||||| || ||| || | || Sbjct 7337 GCCGCGGGTCTGGACCTGTCGGCTGCTTACGACGCCGTGATCCC-CGCGGGCGGC--AAG 7281 Query 39995 G--CTGGTGAAGACGGACATTGCTCTACAAC-TACCCAAAGAGTGCTACGGTAGAATAGC 40051 | || || ||||||||| | | || | | ||||| | | ||||||| | | || Sbjct 7280 GGCCTCGTCAAGACGGACCTGG-TCATCGCCGTACCCGACGGCTGCTACGCGCGCGTGGC 7222 Query 40052 GCCTCGGTCCGGACTGGCGCTGAAGCACGGTATCGACATTTCGGCCGGCGTCATAGATTC 40111 ||| || |||||||| ||||| ||| | ||||||| |||||||| || || | Sbjct 7221 GCCGCGCTCCGGACTCGCGCTCAAGAAGTTCATCGACACGGGCGCCGGCGTGATCGACGC 7162 Query 40112 TGACTACACGGGCAACGTGGGCGTGGTGATGGTGAACAACGGAGACGAGGCCTTTGTGGT 40171 |||||| ||||||||||||||| | || | ||| ||| | ||||| ||| || Sbjct 7161 CGACTACCGCGGCAACGTGGGCGTGATCCTGTTCAACCACGCGGCCGAGGACTTCCCCGT 7102 Query 40172 GCTTCGAGGAGACCGCATCGCCCAGCTCATACTGGAG 40208 || ||||||||| | || |||||||| || ||| Sbjct 7101 CAAGCGCGGAGACCGCGTGGCGCAGCTCATCCTCGAG 7065 >seq132 Length=78195 Score = 87.8 bits (96), Expect = 1e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || ||||| |||||||||||||||||| || || Sbjct 54557 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTC-GCT 54499 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| || | |||||||| || || ||||| |||||||| || ||| Sbjct 54498 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 54439 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| |||||| || || ||||| Sbjct 54438 GATGCCCTCCTTGTCCTGGATCTTCTGCTT 54409 Score = 87.8 bits (96), Expect = 1e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || ||||| |||||||||||||||||| || || Sbjct 54785 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTC-GCT 54727 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| || | |||||||| || || ||||| |||||||| || ||| Sbjct 54726 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 54667 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| |||||| || || ||||| Sbjct 54666 GATGCCCTCCTTGTCCTGGATCTTCTGCTT 54637 Score = 87.8 bits (96), Expect = 1e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || ||||| |||||||||||||||||| || || Sbjct 55013 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTC-GCT 54955 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || || |||| || | |||||||| || || ||||| |||||||| || ||| Sbjct 54954 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 54895 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| |||||| || || ||||| Sbjct 54894 GATGCCCTCCTTGTCCTGGATCTTCTGCTT 54865 Score = 86.0 bits (94), Expect = 5e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || ||||||||||| || ||||| |||||||||||||||||| || || | || || Sbjct 55232 AGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTC-GCTCAGCGTGCG 55174 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 |||| || | |||||||| || || ||||| |||||||| || ||| | || ||| Sbjct 55173 ACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTC 55114 Query 34029 TTTGTCCATAATTTTTTGCTT 34049 |||||| || || ||||| Sbjct 55113 CTTGTCCTGGATCTTCTGCTT 55093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397021053892288