Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq326 116 8e-21 seq6666 105 1e-17 seq347 93.3 9e-14 >seq326 Length=38572 Score = 116 bits (128), Expect = 8e-21 Identities = 658/1040 (63%), Gaps = 43/1040 (4%) Strand=Plus/Minus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| |||||||| ||||||| ||||| |||||||||| ||| ||| || Sbjct 25893 CTCCTTGTCCTCACCGGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTCTCGTCGAG 25834 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 || ||| |||||||||||||| ||||| |||||||| || | |||||| || || Sbjct 25833 GTGCGACTCAATGTGGTGGAAAGCGTGCTGAGCCACGTAGGCGAAACGCATGGAAGGGTG 25774 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 |||||| || ||| | || | |||| | ||||| |||| ||| || || || Sbjct 25773 CTTCCACACCTGACCGCTCGTCGGCTCCACCTCACCCGTCAGCATCTTGATCAGCGTCGA 25714 Query 333494 TTTTCCCGCACCATTTTCGCCTACCACACCAATCCTG-------GAGTTCAGCGATACCT 333546 || || ||||| || ||| | |||| | || | | ||| || || ||| Sbjct 25713 CTTACCGGCACCGTTGGGGCCAAGCACAGCGATACGGCTCGACAGAGCGCA-CGTCACCG 25655 Query 333547 GGGCATTCACGTTG-TCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCG 333605 | || |||| || | | | || ||||| || |||| | | | || Sbjct 25654 AGATGTT---GTTGATCGACG----GCTTCGGGGTACCAGGGTACTGGTA-CGAGCAGTT 25603 Query 333606 CGT-AGCTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGG 333664 || || ||||||| |||| |||| | | ||||| || ||||| || Sbjct 25602 GGTCAGACGAATGATGGGCTTACCCTTGTTCTTGATGTCAGCAAGGAAACCAGGCTCCGG 25543 Query 333665 GAAC-----TTCCACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAACTCGCTGATTCGGGA 333719 |||| | ||||| ||| || ||| || ||||||| | | ||||| Sbjct 25542 GAACGTGAACTTCACGTTGTC--CGACTC---CAGCTCGTAGTAGGCCTTGGCCTCGGGC 25488 Query 333720 CGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCG 333779 || || ||||| || || || |||||||| |||||||||| || | ||| Sbjct 25487 TTCTGCTCAACGAAGAGAGAAAGGTTGCCCTTGTAGATCTTCAGCTTACGG---GTCTCG 25431 Query 333780 TAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACG 333839 || ||||| || ||| || || ||| ||||| || |||||||| ||||| || | | Sbjct 25430 TAGTGGATGATGTTGGTACACACGTTGTCAAGGAAGCCAGAGTCGTGGGACACCATGATG 25371 Query 333840 CACGAAAC-GTCCTTAAGGTTGATCAGGTA-TTCAATC-AGCCACCTCACGTTAGACACA 333896 | | || ||| | | | | ||||||| ||| || ||||| ||||| ||| Sbjct 25370 GAGGTGACAGTCGGCACGCTCG-TCAGGTAGTTC--TCAAGCCAGGCGACGTTCTTGACA 25314 Query 333897 GAAAGATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGT 333956 | ||||| |||||||| ||||| || || | | || ||||| ||||| ||||| Sbjct 25313 TCCAAGTGGTTTGTCGGCTCATCAAGCAGCAGAATGTCAGCCTTCAGCAGCATAGCACGC 25254 Query 333957 GCAAGAGCGAGTTTCATTTTCCACCCTCCTGAAAGAGTGTTAATTGGGGCAGATTGGCGC 334016 | || |||||||||| ||||| || || ||||| | | | | || || | Sbjct 25253 GACAGCTCGAGTTTCATCTTCCAACCACCAGAAAGGGAGCCCACAGCCTGAGCCTGCATC 25194 Query 334017 TCAATATCAAAGCCAACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTTT 334076 || ||||| || | |||| | | || | |||| | | Sbjct 25193 TCGGCGGTGAAGCCGACATCAGCCAGAGCGTCCTCAACCTCCTTGCGAG------GGGTG 25140 Query 334077 TCCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCATGTTAGAATCGGACCCG 334136 ||||| | | |||||| | |||||||||| | | | | || || || | Sbjct 25139 TCCTTCAGGTCGTCATCAATCAGGATGAAGTCAACCACCGTAAGCTCAGCCTCCGAAGCC 25080 Query 334137 TCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTTCAAGC 334196 | || | ||| || ||| | |||| |||| | ||| |||||| || || ||| Sbjct 25079 TGCAGGTTGTGCTCGACGAACACAGTCTTCAGCTCGTCCTTGCTGGGGAAGCCCTCGAGC 25020 Query 334197 TGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCACACAGA 334256 || ||||| |||| ||||||||||| || || ||||| ||||| || || |||||| Sbjct 25019 TGGCCGTTGGCAATGGCGCGCATCAGCGTCGACTTACCACAACCGTTGGGACCGCACAGA 24960 Query 334257 CCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTCCACCA 334316 ||||| |||| |||||||| || | || | |||||||| ||||| | ||||| Sbjct 24959 CCGTAACGGTGGCCACGCTTGAGGCGAAGACGGGCGTTGTTCAGCAGAATCATACCACCG 24900 Query 334317 TATGCCAGAGAAAATTCACA 334336 || || || || || || || Sbjct 24899 TAAGCGAGCGAGAACTCGCA 24880 >seq6666 Length=2405 Score = 105 bits (116), Expect = 1e-17 Identities = 258/383 (67%), Gaps = 6/383 (2%) Strand=Plus/Minus Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 |||||| ||||||| ||||| ||| || | ||||||||||| | | || ||| Sbjct 1815 TTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTCTCGAAC 1756 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCAAA 243464 ||| | ||||| || ||||||||| | ||| | |||| ||| || ||||| || || Sbjct 1755 GAGCTGATCAGCCGTGACGAGGGCATGCACACGGACTTCGCGTGC-CTCATGTACTCCAA 1697 Query 243465 GCTCCAGAACAAGCTACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAA 243523 ||| ||||||||| || || || || | | ||| | || || || | Sbjct 1696 GCTGGTGAACAAGCTGCCGGA-GAGCCGCGTGCACGAGATCGTGCGCGACGCGGTGACGA 1638 Query 243524 ACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCG-GCTTATTGGCATGAACTCTGAA 243582 ||| | || ||| | | ||| | | || || | ||| || ||||||||||| | Sbjct 1637 TCGAGCACGAGTTCGTGCGTGACTCGCTCCC-TGTGGAGCTGATCGGCATGAACTCGGGG 1579 Query 243583 CTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAG 243642 |||||| | ||||||||||| ||||| |||||||| | | | |||| ||| | Sbjct 1578 CTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCTGCTGTACTCGCTGGGTGTGTCG 1519 Query 243643 AAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAA 243702 || | |||||| |||||||| || | || ||||| | || ||||| || || || Sbjct 1518 AAGATCTACAACGTAAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGGCAAG 1459 Query 243703 ACTAACTTCTTCGAAAAGCGTGT 243725 || ||||| ||||| ||||| || Sbjct 1458 ACGAACTTTTTCGAGAAGCGCGT 1436 >seq347 Length=38231 Score = 93.3 bits (102), Expect = 9e-14 Identities = 144/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 297434 TTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAAC 297493 || ||||||||||| || || || || |||||| || ||| ||| | || ||||||| Sbjct 27415 TTCGTGAAAATATAACGAGCGCTGGCTGCATCCTTGCCGCCCATCAAACGCGTACCGAAC 27474 Query 297494 TGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTC 297553 || || ||| ||| || |||||| |||||||||||| | ||||| || | ||| Sbjct 27475 TGACCGATTGGCGACAGGAGGTGGATGTTGTTGCTTCCGACAAAGTCCTGAGCCATGTTG 27534 Query 297554 ACGATGGTCCCTTGCAGA-GATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTA 297612 ||||| || |||| | ||| ||||| || || || ||| ||||||| || || Sbjct 27535 ACGATACAGCCCTGCAAACTCTGC-TCGCCGTGATGGTACGCGGAGTGCTCTGACACATA 27593 Query 297613 ACCGCTGAACTGTGCAACCTTCA 297635 ||| || ||||| ||||||| Sbjct 27594 ACCAGCCAATTGTGCCACCTTCA 27616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102759267726400