Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq6666 185 1e-41 seq92 132 6e-26 >seq6666 Length=2405 Score = 185 bits (204), Expect = 1e-41 Identities = 398/587 (68%), Gaps = 16/587 (3%) Strand=Plus/Plus Query 125752 CTTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT 125811 |||| ||| || || || ||||||||||| ||||| ||||| || | || ||| | Sbjct 1420 CTTGGAGTACTCGCCCACGCGCTTCTCGAAAAAGTTCGTCTTGCCCTGCAGCGAGATCAT 1479 Query 125812 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAG 125871 ||||| | || || ||||||||| ||| | || | | ||| || | | | || Sbjct 1480 GTCCATCCAGTCGAACGGGTTCTTTACGTTGTAGATCTTCGACACACCCAGCGAGTACAG 1539 Query 125872 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 125931 ||||| || | ||| |||| ||||||| |||| | | |||||||| ||||| || Sbjct 1540 CAGACGGTCGGCCACGAACTCGATGTACTGGCACATGAGCCCCGAGTTCATGCCGATCAG 1599 Query 125932 GTT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGA 125990 | ||| ||||||| ||| | |||| | | ||| || ||| || || ||||||| Sbjct 1600 CTCCACA-GGGAGCGAGTCACGCACGAACTCGTGCTCGATCGTCACCGCGTCGCGCACGA 1658 Query 125991 TGGCGTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC------CA 126044 | |||| | | | | || || ||| || |||| |||| | || Sbjct 1659 TCTCGTGCACGCGGCTCTCC---GGCAGCTTGTTCACCAGCTTG--GAGTACATGAGGCA 1713 Query 126045 CGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTC 126104 || | || || ||| | |||||||||||| ||| || || |||||||||| ||| | Sbjct 1714 CG-CGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGC 1772 Query 126105 CTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGA 126164 | |||||||| || |||||||| | |||||| || | || || || ||||||||||||| Sbjct 1773 CAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGA 1832 Query 126165 TTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACT-TTGTGTCA 126223 | ||||||||| |||||||| | |||||||| | | || || ||| | ||| Sbjct 1833 TGCCCTCCACAGCTGCGAACGCCAGCAGACGCTCCGGGTACGA-CGACACTCGCGGGTCG 1891 Query 126224 AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCA 126283 ||||||| | |||||| ||||| || |||| | |||||||| || | ||| || Sbjct 1892 CACCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGATCGTATCGATGGCACGC 1951 Query 126284 AAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 126330 | || | | ||| || | | ||| ||||||||| | || ||||| Sbjct 1952 AGCAGGTGGTCCTTCTCCGTCGCATCCTTGATGTACGTGTCAATGAG 1998 >seq92 Length=63871 Score = 132 bits (146), Expect = 6e-26 Identities = 191/267 (72%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 |||||||||||| ||| || || |||||||||| ||| || ||| |||| || |||||| Sbjct 49533 CCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCGTGAGGCCGCGCTTC 49474 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 || | |||||| |||| || || || |||||||||||||| |||||||| |||||| Sbjct 49473 TTGAGCCAGAAGATCGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCCACGGTTGCGAAC 49414 Query 126185 GCAAAGAGACGCTCAGCAAAGGAGCGCGACT-TTGTGTCAAACCACTTCATCGCCCACTG 126243 | | | ||||| | | || || ||| | ||| ||||||| | |||||| || Sbjct 49413 GTCAGCACGCGCTCCGGGTACGA-CGACACTCGCGGGTCGCACCACTTGAGCGCCCAGTG 49355 Query 126244 CGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGA 126303 ||| || |||| | |||||||| || | ||| || | || | | ||| || | Sbjct 49354 CGCTTTCTTCTTCACACACGGGATCGTATCGATGGCACGCAGCAGGTGGTCCTTCTCCGT 49295 Query 126304 TGGATCTTTGATGTACTTATCTATGAG 126330 | ||| ||||||||| | || ||||| Sbjct 49294 CGCATCCTTGATGTACGTGTCAATGAG 49268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597289802635520