Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq570 118 1e-21 seq132 102 8e-17 seq884 98.7 1e-15 seq1247 87.8 2e-12 seq1232 86.0 6e-12 >seq570 Length=29657 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| |||| | ||||| || || | |||||| || || || |||||||| || Sbjct 28823 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 28764 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| |||| || |||||||||||||| | ||||| |||||||||||||| || Sbjct 28763 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 28704 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTAT-CACCGGCGTCCAC 64395 || || || || || || || || ||||| || || | | | | |||| ||||| Sbjct 28703 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGC-TCCAC 28645 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | || | ||||||||| |||| || || |||||||| |||||| Sbjct 28644 GTCGAGTGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAAATCTGCATT 28596 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| |||| | ||||| || || | |||||| || || || |||||||| || Sbjct 29051 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 28992 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| |||| || |||||||||||||| | ||||| |||||||||||||| || Sbjct 28991 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 28932 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTAT-CACCGGCGTCCAC 64395 || || || || || || || || ||||| || || | | | | |||| ||||| Sbjct 28931 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGC-TCCAC 28873 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | || | ||||||||| |||| || || ||||| || |||||| Sbjct 28872 GTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATT 28824 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| |||| | ||||| || || | |||||| || || || |||||||| || Sbjct 29279 CCGCCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 29220 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| |||| || |||||||||||||| | ||||| |||||||||||||| || Sbjct 29219 AGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 29160 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTAT-CACCGGCGTCCAC 64395 || || || || || || || || ||||| || || | | | | |||| ||||| Sbjct 29159 ATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGC-TCCAC 29101 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | || | ||||||||| |||| || || ||||| || |||||| Sbjct 29100 GTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATT 29052 Score = 109 bits (120), Expect = 5e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | |||||| || || || |||||||| || | ||||| |||| Sbjct 29492 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACCGTCC 29433 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||||||||| | ||||| |||||||||||||| || || || || || || Sbjct 29432 TCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 29373 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTAT-CACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||||| || || | | | | |||| ||||| || | || | ||| Sbjct 29372 TGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGC-TCCACGTCGAGCGTGATGGT 29314 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||||| |||| || || ||||| || |||||| Sbjct 29313 CTTGCCCGTCAGCGTCTTGACGAAGATCTGCATT 29280 >seq132 Length=78195 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| || || | |||||| || || ||||||||||| || Sbjct 54557 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 54498 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| |||| |||||||||||||| || | || || ||||||||||| || || Sbjct 54497 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 54438 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTAT-CACCGGCGTCCAC 64395 || || || || || || || || ||||| || || | | | | |||| ||||| Sbjct 54437 ATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGC-TCCAC 54379 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||| |||| || || ||||| || ||||| Sbjct 54378 GTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 54331 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| || || | |||||| || || ||||||||||| || Sbjct 54785 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 54726 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| |||| |||||||||||||| || | || || ||||||||||| || || Sbjct 54725 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 54666 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTAT-CACCGGCGTCCAC 64395 || || || || || || || || ||||| || || | | | | |||| ||||| Sbjct 54665 ATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGC-TCCAC 54607 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||| |||| || || || || || ||||| Sbjct 54606 GTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 54559 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| || || | |||||| || || ||||||||||| || Sbjct 55013 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 54954 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| |||| |||||||||||||| || | || || ||||||||||| || || Sbjct 54953 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 54894 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTAT-CACCGGCGTCCAC 64395 || || || || || || || || ||||| || || | | | | |||| ||||| Sbjct 54893 ATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGC-TCCAC 54835 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||| |||| || || || || || ||||| Sbjct 54834 GTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 54787 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | |||||| || || ||||||||||| || | ||||| |||| Sbjct 55226 AGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTCC 55167 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 |||||||||||||| || | || || ||||||||||| || || || || || || || Sbjct 55166 TCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 55107 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTAT-CACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||||| || || | | | | |||| ||||| || | || | || Sbjct 55106 TGGATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGC-TCCACGTCCAGCGTGATCGT 55048 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| |||| || || || || || ||||| Sbjct 55047 CTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 55015 >seq884 Length=21595 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/190 (73%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 || || |||||||| || | || ||||| |||| || |||||||||||||| | || Sbjct 4796 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 4855 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 || ||||||||||| || || || || || || || || ||||| ||||| ||| || Sbjct 4856 AGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 4915 Query 64376 A--CTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | |||| | |||| ||||| || | || | ||||||||| |||| || || || | Sbjct 4916 ATGCTGTCGGA-CGGC-TCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAA 4973 Query 64434 AAATTTGCAT 64443 | || ||||| Sbjct 4974 AGATCTGCAT 4983 >seq1247 Length=16529 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||||||| ||||| | || | || | | ||||||||||| || | Sbjct 15023 ACCACCCCGCAATCTCAGCACCAAGTGCAGAGTGCTGCCGTACTGAATGTTGTAGTCCGA 14964 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || | || ||||||||||||||||||| ||| |||||| ||||||||| || ||||| Sbjct 14963 GAGCTTTCGACCGTCTTCAAGCTGCTTGCCTGCAAAAATGATCCGCTGCTGATCTGGAGG 14904 Query 64336 AATTCCTTCTTTTTCTTGTAT 64356 || || |||| ||| || || Sbjct 14903 GATACCCTCTTGTTCCTGAAT 14883 >seq1232 Length=16645 Score = 86.0 bits (94), Expect = 6e-12 Identities = 328/511 (64%), Gaps = 13/511 (3%) Strand=Plus/Plus Query 155010 TCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCGTTTTCCTCCT---TGA 155066 || |||||||| ||||| ||||| | ||| | | ||| || || || ||||| || Sbjct 1659 TCTGCGTGCCAAGGCTCCAAATAGATGGCGAAGGAGCCCTTACGCTTGCCTCCGCCCTGG 1718 Query 155067 TCCACGTGACGCACACAATTATTGTACACGCGCAACAATGGTTCCACGCCGCTGGCCGTG 155126 ||||||| ||| | | || |||| |||| || || | ||| ||| || | Sbjct 1719 TCCACGTACCGCGCGGTGTCGTTAAACACCCGCAGCATGGGGATGATGCCATTGGACGAG 1778 Query 155127 CCGTTGGTGCCACGTATCGCGCTGCCGCGAGCACGCGCTTTATGAACATTAACGCCCAAA 155186 ||||| ||||| || || |||| | || || || || | | | | ||| | | Sbjct 1779 CCGTTCGTGCCTCGGATGTAGCTGTTGGTGGCTCGGATGTTGTGCATACTGATGCCAATA 1838 Query 155187 CCTCCGCCGTATTTAGATATTTGCGCACAGTCCGCCAAAGTTTCGTACATTCCTTTGATG 155246 |||||| | ||||||| || ||||| | | || || ||||| || |||| || Sbjct 1839 CCTCCGGCCCATTTAGAGATACAGGCACATTGCTTTAACGTGTCGTAAATGCCTTCAATT 1898 Query 155247 CTGTCTTCTTTCAACGTCAACAAGAAACACGAAGATAATTGAGGTTGAGGGCAGCCGGCC 155306 ||| |||| || | ||| | ||| || || || | ||| || | || |||||| Sbjct 1899 GAGTCGTCTTGCATGGCCAATAGGAAGCAAGACGACAGTTGTGGGCGCGGCGTGCCGGCG 1958 Query 155307 GCAAATAATGTAGGACTAGCGTGTGT---AAACATTTTGTTGGCGGT-TAAGTT-GTAAG 155361 ||| | ||| || | || || || |||||||| ||| |||| | ||| | Sbjct 1959 TTAAAAAGTGTCGGGGTGGCATGCGTGAAAAACATTT-----GCGACATAAGCTCGTACG 2013 Query 155362 TTTCGATGGCGGCGTCAATGTCACGACCGTGTATACCGATCGCCACGCGCATCAGCATGT 155421 | || | |||||| |||||| | ||| || || | ||||||||||| | ||| | Sbjct 2014 TCTCCAGGGCGGCCGCAATGTTGCTCTTGTGGATGCCAAGTGCCACGCGCATAATCATTT 2073 Query 155422 GTTGAATGCGCTCCGCAACGCGGCCGTTGATGCGCTTTAAGTACCCATTTTCCAAAGTTT 155481 | || |||||| | || |||||| | ||| | |||||| || | ||||| Sbjct 2074 GCTGCGGACGCTCCACCACTTTGCCGTTTACGCGGAAGAGGTACCCGCGCTCGAGAGTTT 2133 Query 155482 TATACGCAAAATACTTGTATTCGTAGTCTCG 155512 || || |||| || | ||| || |||| || Sbjct 2134 TAAACCCAAAGTAGTCGTAATCAAAGTCCCG 2164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499591437935360