Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1232 405 5e-108 >seq1232 Length=16645 Score = 405 bits (448), Expect = 5e-108 Identities = 1111/1692 (66%), Gaps = 45/1692 (3%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 ||||||||||| || || ||||| || || ||| ||||| |||| || || ||||| Sbjct 1978 GCCACCCCGACACTTTTTAACGCCGGCACGCCGCGCCCACAACTGTCGTCTTGCTTCCTA 1919 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || | | | | |||||| || || |||| ||||| | ||| | ||||| Sbjct 1918 TTGGCCATGCAAGACGACTCAATTGAAGGCATTTACGACACGTTAAAGCAATGTGCCTGT 1859 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| |||| || || || || || |||||| | ||| || | || |||| | Sbjct 1858 ATCTCTAAATGGGCCGGAGGTATTGGCATCAGTATGCACAACATCCGAGCCACCAACAGC 1799 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 |||||||| || || || ||| | ||||| ||| || |||| ||||| ||||| || ||| Sbjct 1798 TACATCCGAGGCACGAACGGCTCGTCCAATGGCATCATCCCCATGCTGCGGGTGTTTAAC 1739 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 || | ||||| |||||||||||||| || || | | | ||||| || ||||| ||||| Sbjct 1738 GACACCGCGCGGTACGTGGACCAGGGCGGAGGCAAGCGTAAGGGCTCCTTCGCCATCTAT 1679 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 | ||||| |||||||| || ||| | ||| | ||||| || ||||||||||||||| Sbjct 1678 TTGGAGCCTTGGCACGCAGATGTGTTCGAGTTCTTGGACCTCCGTAAGAACCACGGCAAC 1619 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || || | | || | ||||| |||||||| || |||||||| || || || ||||| Sbjct 1618 GAGTTGCACCGCGCTCGCGACCTGTTCTACGCCCTTTGGGTGCCTGATCTGTTCATGAAG 1559 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 | || || || | |||||||| | ||| || || || || ||||| | Sbjct 1558 AGGGTGGAAGCCAATGGCAAGTGGAGTCTCTATTGCCCTAACGAGGCCCCTGGACTCTAT 1499 Query 94372 GACGTTTGTGGATCG-CG-TTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGG 94429 || | ||| || || || || | | | |||| ||||| || |||| | Sbjct 1498 GA--GTGCTGGGGCGACGAATTCGAGGCCCTCTATGAAAAGTACGAGACGGAGGGACGCG 1441 Query 94430 CCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGA 94489 || | ||| || | || | |||||||| || |||||| ||| | |||| Sbjct 1440 CCCGCAAGACGATCAACGCCCAGCAGCTGTGGTTCGCCATATTGGACGCCCAGATTGAGA 1381 Query 94490 CGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACC 94549 |||| ||||| || |||| ||||||| | | |||| |||||| |||||| || ||| Sbjct 1380 CGGGAGTGCCCTTTATGTTGTACAAGGACGCGGCCAACCGCAAGTCGAACCAGAAGAACC 1321 Query 94550 TCGGGGTGATCAAGAGCTC---GAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGG 94606 |||| |||| |||| || | ||| ||| | | ||||| || || |||| Sbjct 1320 TCGGCACGATC---CGCTCCAGCAACTTATGCTGTGAGGTGATGGAGTACACGTCGCCGG 1264 Query 94607 ACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCT 94666 ||||| | |||||||| ||| ||| || | ||| | | |||||| || | Sbjct 1263 ACGAGGTGGCTGTGTGCAACTTGGCGTCTGTGGCGCTGCCTAAGTTCGTGGAGGAAG--G 1206 Query 94667 ACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGT-- 94724 | || ||| | | | || | | |||| | ||||| |||| Sbjct 1205 AGTTTTCAACT----------ACCAGAAGTTG--TATGAAGT---GACGAAGG-TGGTCA 1162 Query 94725 -CTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACT 94783 | ||| | |||| ||| |||||| |||| ||||||||| |||||| || | Sbjct 1161 CCCGCAACTTAAACAAGGTCATCGACGTCAACTACTACCCCGTGATCGAGGCGCGCAAGT 1102 Query 94784 CAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGA 94843 | ||| || || || |||||||| || ||||||||||| ||||||||||| | | Sbjct 1101 CCAACATGCGTCACCGCCCCATCGGTATTGGCGTCCAGGGCCTCGCGGACGCGTTTATCC 1042 Query 94844 TGATGCGTCTGC-CCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAA 94902 | ||| || | | | ||| | | || || | || |||||| ||||| Sbjct 1041 TCATG-AACTACGCGTTCGAGAGCGAGAAGGCCCGGGAGCTCAACAAGAACATCTTCGAG 983 Query 94903 AGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCA 94962 | ||| || | || |||||| | || | | | |||| ||| ||| || Sbjct 982 ACCATCTACTTCGCCGCCATGGAGACGTCGATGGAGATCGCCA---AGGAACTCGGCCCG 926 Query 94963 CACGAATCGTTCCGCGGATCGCCC-TTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGG 95021 |||| |||||| || |||||| | | | ||||||| || ||||||||| | ||||| Sbjct 925 TACGAGACGTTCCAGGGCTCGCCCGCTAGCA-AGGGCATCTTCCAGTTCGACATGTGGGG 867 Query 95022 TGTGA---AGCCCTCGGGTCTGTACGACTGGG--AAGCTCTACGCGCTGATGTTATCAAA 95076 || | | | |||||| ||| |||||| | |||| | | | || || ||||| Sbjct 866 CGTCACCCCGTCGTCGGGTATGTGGAACTGGGCTACGCTCAAGGAG--GACGTGATCAAG 809 Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 ||||| | ||| ||||||| |||||||||||||| ||||| |||||||| |||||| Sbjct 808 CACGGACTCCGCAACTCGCTGCTGGTGGCCCCCATGCCGACGGCTTCCACGGCCCAGATC 749 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 ||||| ||||||||||| |||| || | ||| |||||| |||||||| | || ||||| Sbjct 748 CTTGGAAACAACGAGTCTATCGAGCCGTACACGTCCAACATGTACAACCGCCGAGTGCTG 689 Query 95197 GCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTG 95256 || || || ||| | || |||||||| |||| | ||| |||| || || | Sbjct 688 GCTGGAGAGTTCACGATCGTCAACAAGTACCTGATGAAGGAGCTGATCGAGCTCGGCATC 629 Query 95257 TGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCG 95316 ||| | || ||||| | | || || ||||||||| |||||| || | Sbjct 628 TGGACGCCGGACGTGCGCAACCAGATCTTGAACGACAGCGGCTCCGTGCAGAACGTCAAG 569 Query 95317 CAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTG 95376 || ||||| || |||||| | |||||||| |||||||||||| |||| | | Sbjct 568 GCGATCCCGGACCACGTCAAGGAGAAGTACAAGACGGTGTGGGAGATCAAGCAGAAGGCG 509 Query 95377 ATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNNNNNNNNNN 95436 | || |||| |||||| |||||| | | ||| |||||||| Sbjct 508 GTGCTGGACCTGTCGGCCGACCGCGGTGCGTACATTTGCCAGAGTCAGTCGCTCAACATC 449 Query 95437 NNNATGGCCGAGCCCAGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGGTGGAGAAAG 95496 || ||||| || | | | || | ||||| ||| ||||||| |||| ||| Sbjct 448 CACATCGCCGACCCGACCATCAGCAAGCTCACGTCGATGCACTTCTACGCCTGGAAGAAG 389 Query 95497 GGTCTCAAGACCGGTATGTATTATTTGCGAACCAGGCCAAAGGCGGACTCCATACAGTTC 95556 || ||||||||||| ||||| || |||| | || || || ||| |||| ||||| Sbjct 388 GGGCTCAAGACCGGCATGTACTACATGCGCGGACGCCCGAAAGCCGACGCCATCAAGTTC 329 Query 95557 GCCCTAGAAAAG 95568 || | || ||| Sbjct 328 ACCGTGGACAAG 317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494670363562240