Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq132 163 3e-35 seq570 136 4e-27 seq1232 134 1e-26 seq884 102 8e-17 seq6666 96.9 3e-15 >seq132 Length=78195 Score = 163 bits (180), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| ||||| || | ||| ||||| || ||||| ||||| |||| | Sbjct 54785 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 54726 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| || || ||||| || |||||| |||||| |||||||| || || || Sbjct 54725 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 54666 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| |||||||||| |||| |||| | ||||| ||| || Sbjct 54665 ATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTG-TCGATCGAGTCCGACGGCTCCAC 54607 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | ||| ||||| ||||| || || ||||| ||||||||| Sbjct 54606 GTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATG 54558 Score = 163 bits (180), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| ||||| || | ||| ||||| || ||||| ||||| |||| | Sbjct 55013 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 54954 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| || || ||||| || |||||| |||||| |||||||| || || || Sbjct 54953 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 54894 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| |||||||||| |||| |||| | ||||| ||| || Sbjct 54893 ATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTG-TCGATCGAGTCCGACGGCTCCAC 54835 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | ||| ||||| ||||| || || ||||| ||||||||| Sbjct 54834 GTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATG 54786 Score = 159 bits (176), Expect = 3e-34 Identities = 175/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | |||| ||||| || | ||| ||||| || ||||| ||||| |||| Sbjct 55242 TCCACCACGAAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCT 55183 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||||| || || ||||| || |||||| |||||| |||||||| || || || Sbjct 55182 CAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGG 55123 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||||||||||||| ||| |||||||||| |||| |||| | ||||| ||| | Sbjct 55122 GATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTG-TCGATCGAGTCCGACGGCTCCA 55064 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 | || | || | ||| ||||| ||||| || || ||||| ||||||||| Sbjct 55063 CGTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATG 55014 Score = 156 bits (172), Expect = 4e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| ||||| || | ||| ||||| || ||||| ||||| |||| | Sbjct 54557 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 54498 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| || || ||||| || |||||| |||||| |||||||| || || || Sbjct 54497 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 54438 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| |||||||||| |||| |||| | ||||| ||| || Sbjct 54437 ATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTG-TCGATCGAGTCCGACGGCTCCAC 54379 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||| ||||| ||||| || || || || |||||||| Sbjct 54378 GTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 54331 >seq570 Length=29657 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || || | |||| ||||| || | ||| ||||| || || || ||||| |||| Sbjct 28824 TCCGCCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 28765 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||||| || || ||||| || || ||| |||| | |||||||| ||||| || Sbjct 28764 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGG 28705 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||||||||||||| || |||||||| | ||||| ||| | ||||| ||| | Sbjct 28704 GATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTGT-CGATCGAGTCCGACGGCTCCA 28646 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | |||| || | || ||||| ||||| || || || ||||||||||| Sbjct 28645 CGTCGAGTGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAAATCTGCAT 28597 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | |||| ||||| || | ||| ||||| || || || ||||| |||| Sbjct 29508 TCCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 29449 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||||| || || ||||| || || ||| |||| | |||||||| ||||| || Sbjct 29448 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGG 29389 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||||||||||||| || |||||||| | |||| |||| | ||||| ||| | Sbjct 29388 GATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTG-TCGATCGAGTCCGACGGCTCCA 29330 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | |||| || | || ||||| ||||| || || || || |||||||| Sbjct 29329 CGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 29281 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || || | |||| ||||| || | ||| ||||| || || || ||||| |||| Sbjct 29052 TCCGCCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 28993 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||||| || || ||||| || || ||| |||| | |||||||| ||||| || Sbjct 28992 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGG 28933 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||||||||||||| || |||||||| | |||| |||| | ||||| ||| | Sbjct 28932 GATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTG-TCGATCGAGTCCGACGGCTCCA 28874 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | |||| || | || ||||| ||||| || || || || |||||||| Sbjct 28873 CGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 28825 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || || | |||| ||||| || | ||| ||||| || || || ||||| |||| Sbjct 29280 TCCGCCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 29221 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||||| || || ||||| || || ||| |||| | |||||||| ||||| || Sbjct 29220 CAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGG 29161 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||||||||||||| || |||||||| | |||| |||| | ||||| ||| | Sbjct 29160 GATGCCCTCCTTGTCCTGAATCTTCTGCTTCACGTTG-TCGATCGAGTCCGACGGCTCCA 29102 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | |||| || | || ||||| ||||| || || || || |||||||| Sbjct 29101 CGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 29053 >seq1232 Length=16645 Score = 134 bits (148), Expect = 1e-26 Identities = 295/441 (67%), Gaps = 6/441 (1%) Strand=Plus/Plus Query 145758 GCGCAGATAGTACATGCCGGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGA 145817 ||||| ||||||||||||||||||||| |||| ||| | ||| ||||| || ||| Sbjct 359 GCGCATGTAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCAT---CGA 415 Query 145818 CATGACCGAGTACGTGG---GTTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAAT 145874 | ||| | | ||| | ||||||| | || || || || ||||| ||| Sbjct 416 CGTGAGCTTGCTGATGGTCGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAAT 475 Query 145875 GAAAGGAGCCCGGTCGGCGGCCATGTCTATCATGCACTTTGATTTAATTTCCCATGCGGT 145934 | | | | | |||||||| | || ||| | || ||| || || ||||| | || Sbjct 476 GTACGCACCGCGGTCGGCCGACAGGTCCAGCACCGCCTTCTGCTTGATCTCCCACACCGT 535 Query 145935 TTTAAAGAGATCCTTGACGTGCTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTC 145994 || | ||||||||||| | || || | | | ||||||||| || || | || Sbjct 536 CTTGTACTTCTCCTTGACGTGGTCCGGGATCGCCTTGACGTTCTGCACGGAGCCGCTGTC 595 Query 145995 GGCCAATATTTTGTTGCGCAATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGAT 146054 | ||| || | |||||||| || || || | ||| | || | || |||| || Sbjct 596 GTTCAAGATCTGGTTGCGCACGTCCGGCGTCCAGATGCCGAGCTCGATCAGCTCCTTCAT 655 Query 146055 GAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCT 146114 || |||| |||||| | | ||||| || || || || || | |||| |||| Sbjct 656 CAGGTACTTGTTGACGATCGTGAACTCTCCAGCCAGCACTCGGCGGTTGTACATGTTGGA 715 Query 146115 GGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCAT 146174 ||| ||||||||| ||||||||||| || || ||||| ||||| | ||| || ||||| Sbjct 716 CGTGTACGGCTCGATAGACTCGTTGTTTCCAAGGATCTGGGCCGTGGAAGCCGTCGGCAT 775 Query 146175 GTACGCCACCAGCAAAGAGTT 146195 | |||||||||| ||||| Sbjct 776 GGGGGCCACCAGCAGCGAGTT 796 >seq884 Length=21595 Score = 102 bits (112), Expect = 8e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| || | |||||| || || ||||| || || ||| ||||| Sbjct 4796 TTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 4855 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || ||||||||||||||| |||||||||||||| | || Sbjct 4856 AGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACATTGTCA 4915 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | | |||| | ||| || || | || | || ||||| ||||| || || ||||| Sbjct 4916 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAG 4975 Query 127106 ATCTGCATG 127114 ||||||||| Sbjct 4976 ATCTGCATG 4984 >seq6666 Length=2405 Score = 96.9 bits (106), Expect = 3e-15 Identities = 126/169 (75%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 47412 GGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTT 47471 || |||||| ||| | | ||| | |||||||||| || || |||||||| ||||| || Sbjct 1593 GGCATGAACTCGGGGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCTGCT-GTA 1535 Query 47472 CA-GCTAAA-GTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACA 47529 | ||| || || ||||| ||| || |||| || ||||| | ||| ||| | Sbjct 1534 CTCGCTGGGTGTGTCG-AAGATCTACAACGTAAAGAACCCGTTCGACTGGATGGACATGA 1476 Query 47530 TTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 | ||||| |||||||||| |||||||||||||||||||| ||||| || Sbjct 1475 TCTCGCTGCAGGGCAAGACGAACTTTTTCGAGAAGCGCGTGGGCGAGTA 1427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475450016514560