Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1232 210 3e-49 seq6666 161 1e-34 seq92 118 1e-21 >seq1232 Length=16645 Score = 210 bits (232), Expect = 3e-49 Identities = 887/1384 (64%), Gaps = 34/1384 (2%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 || ||||||| |||||| ||||| | |||| ||||| || | ||| ||||| ||||| Sbjct 705 TACATGTTGGACGTGTACGGCTCGATAGACTCGTTGTTTCCAAGGATCTGGGCCGTGGAA 764 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || || |||||||| |||| || || ||||||||| || | | | | ||| Sbjct 765 GCCGTCGGCATGGGGGCCACCAGCAGCGAGTTGCGGAGTCCGTGCTTGATCACGTCCTCC 824 Query 116023 TTGAGGGCGTCCCAGT----CGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTG 116078 ||||| | |||||| | || || | | | | ||||||| || ||||| Sbjct 825 TTGAGCGTAGCCCAGTTCCACATACCCGACGACGGGGTGACGC-CCCACATGTCGAACTG 883 Query 116079 GAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGC 116138 || ||| || | | || ||||| |||| || ||||| || ||||| ||| || Sbjct 884 GAAGATGCCCTTGCTAGCGGGCGAGCCCTGGAACGTCTCGTACGGGCCGAGTTCCTTGGC 943 Query 116139 CAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCAT 116198 | || || ||| | ||| ||| || || ||||| || ||| || | Sbjct 944 GATCTCCATCGACGTCTCCATGGCGGCGAAGTAGATGGTCTCGAAGATGTTCTTGTTGAG 1003 Query 116199 TGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAA-ATAAATACATCCGCGAGAC 116257 || ||||| ||| || |||||| | || | ||||| | |||||||| | Sbjct 1004 CTCCCGGGCCTTCTCGCTCTCGAACGCGT-AGTTCATGAGGATAAACGCGTCCGCGAGGC 1062 Query 116258 CTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CA 116314 | ||||| || | || || ||||| || | ||| || ||||| || || ||| || Sbjct 1063 CCTGGACGCCAATACCGATGGGGCGGTGACGCATGTTGGACTTGCGCGC---CTCGATCA 1119 Query 116315 CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTT 116374 |||| || | || ||||| ||| | |||| || |||||| ||||| || | || Sbjct 1120 CGGGGTAGTAGTTGACGTCGATGACCTTGTTTAAGTTGCGGGTGACCACCTTCGTCACTT 1179 Query 116375 CATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGA 116434 ||| | ||| | ||| | ||| | || |||| | || ||||||| || || | Sbjct 1180 CATACAACTTCTGGTAGTTGAAA-----ACTC-CTTCCTCCACGAACTTAGGCAGCGCCA 1233 Query 116435 TTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTAC 116494 ||||||| || ||||||| ||| ||| |||||||| || | || | Sbjct 1234 CAGACGCCAAGTTGCACACAGCCACCTCGTCCGGCGACGTGTACTCCATCACCTCACAGC 1293 Query 116495 ACAAATT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGC 116552 | || || || | || ||||| | |||||| || || ||||| ||| ||| Sbjct 1294 ATAAGTTGCTGGAGCGG--ATCGTGCCGAGGTTCTTCTGGTTCGACTTGCGGTTGGCCGC 1351 Query 116553 ATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 116612 |||||||| | |||| | ||| |||||||| | |||| | | || || ||| Sbjct 1352 GTCCTTGTACAACATAAAGGGCACTCCCGTCTCAATCTGGGCGTCCAATATGGCGAACCA 1411 Query 116613 TACATCGGC--GGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAG 116670 || | || ||| | || | ||| || |||||| |||||||||| ||| Sbjct 1412 --CAGCTGCTGGGCGTTGATCGTCTTGCGGGCGCGTCCCTCCGTCTCGTACTTTTCATAG 1469 Query 116671 AGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAA 116729 |||||||| || || || ||| |||| ||| |||| || || |||| | || || | Sbjct 1470 AGGGCCTCGAATTCGTCGCCC-CAGCACTCATAGAGTCCAGGGGCCTCGTTAGGGCAATA 1528 Query 116730 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 116789 |||| ||| | ||| | || |||| ||||||||| || || || | ||| || || Sbjct 1529 GAGACTCCACTTGCCATTGGCTTCCACCCTCTTCATGAACAGATCAGGCACCCAAAGGGC 1588 Query 116790 CGAGAAGAGATCCCGACAGC-GAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 116848 |||| || || ||| || | || | || | || || || ||| | ||||| | Sbjct 1589 GTAGAACAGGTCGCGAGCGCGGTGCAAC-TCGTTGCCGTGGTTCTTACGGAGGTCCAAGA 1647 Query 116849 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---AC 116905 | || | | ||| |||||||| || |||| || | |||| || ||||| || | Sbjct 1648 ACTCGAACACATCTGCGTGCCAAGGCTCCAAATAGATGGCGAAGGAGCCCTTACGCTTGC 1707 Query 116906 GACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATAC 116965 || |||||| || |||| ||| || ||||||| || || ||||| || ||||| | Sbjct 1708 CTCCGCCCTGGTCCACGTACCGCGCGGTGTCGTTAAACACCCGCAGCATGGGGATGATGC 1767 Query 116966 CATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGT 117025 ||| || ||| || || || || || ||| |||||| || | ||| || Sbjct 1768 CATTGGACGAGCCGTTCGTGCCTCGGATGTAGCTGTTGGTGGCTCGGATGTTGTGCATAC 1827 Query 117026 GCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGA 117085 || |||||||| || ||||| || ||||| || || | | | | || |||| | Sbjct 1828 TGATGCCAATACCTCCGGCCCATTTAGAGATACAGGCACATTGCTTTAACGTGTCGTAAA 1887 Query 117086 TCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTG 117145 | || || || ||||| | | | || | |||||||| ||||| |||||| | | Sbjct 1888 TGCCTTCAATTGAGTCGTCTTGCATGGCCAATAGGAAGCAAGACGACAGTTGTGGGCGCG 1947 Query 117146 GTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTAT 117205 | || || ||||| || || || || || || || |||| | ||| ||||| | Sbjct 1948 GCGTGCCGGCGTTAAAAAGTGTCGGGGTGGCATGCGTGAAAAACATTTGCGACATAAGCT 2007 Query 117206 CGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAA 117265 |||| ||||||| | | | | ||||| | ||| || || | || || ||||||| Sbjct 2008 CGTACGTCTCCAGGGCGGCCGCAATGTTGCTCTTGTGGATGCCAAGTGCCACGCGCATAA 2067 Query 117266 ACAT 117269 ||| Sbjct 2068 TCAT 2071 >seq6666 Length=2405 Score = 161 bits (178), Expect = 1e-34 Identities = 395/588 (67%), Gaps = 18/588 (3%) Strand=Plus/Plus Query 127225 CTTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATT 127284 |||| ||| || || || ||||||||||| ||||| ||||| || | || ||| | Sbjct 1420 CTTGGAGTACTCGCCCACGCGCTTCTCGAAAAAGTTCGTCTTGCCCTGCAGCGAGATCAT 1479 Query 127285 CTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAG 127344 ||||| | || || ||||||||| ||| | || | | ||| || | | | || Sbjct 1480 GTCCATCCAGTCGAACGGGTTCTTTACGTTGTAGATCTTCGACACACCCAGCGAGTACAG 1539 Query 127345 GAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG 127404 ||||| || | ||| |||| ||||||| |||| | | |||||||| ||||| || Sbjct 1540 CAGACGGTCGGCCACGAACTCGATGTACTGGCACATGAGCCCCGAGTTCATGCCGATCAG 1599 Query 127405 GTT-ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGA 127463 | ||| ||||||| ||| | |||| | | ||| || ||| || || || |||| Sbjct 1600 CTCCACA-GGGAGCGAGTCACGCACGAACTCGTGCTCGATCGTCACCGCGTCGCGCACGA 1658 Query 127464 TGGCGTGAATAGTGTCCACCC-CAGGTCTATT-----GCGTAAAGT-CTTGAAGAGTTCC 127516 | |||| | | | || ||| | | || || | ||| | ||| | | Sbjct 1659 TCTCGTGCACGCGGCTCTCCGGCAGCT-TGTTCACCAGCTTGGAGTACATGAGG-----C 1712 Query 127517 ACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGA 127576 || || || || ||| | |||||||||||| ||| || || |||||||||| ||| Sbjct 1713 AC-GCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGG 1771 Query 127577 CCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAG 127636 || |||||||| || |||||||| | |||||| || | || || ||||| ||||||||| Sbjct 1772 CCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAG 1831 Query 127637 ATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACT-TTGTATC 127695 || ||||||||| |||||||| | |||||||| | | || || ||| | || Sbjct 1832 ATGCCCTCCACAGCTGCGAACGCCAGCAGACGCTCCGGGTACGA-CGACACTCGCGGGTC 1890 Query 127696 AAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTC 127755 ||||||| | |||||| || || || |||| | ||| |||| || | ||| || Sbjct 1891 GCACCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGATCGTATCGATGGCACG 1950 Query 127756 AAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 127803 | || | | ||| || | | ||| ||||||||| | || ||||| Sbjct 1951 CAGCAGGTGGTCCTTCTCCGTCGCATCCTTGATGTACGTGTCAATGAG 1998 >seq92 Length=63871 Score = 118 bits (130), Expect = 1e-21 Identities = 188/267 (70%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 |||||||||||| ||| || || |||||||||| ||| || ||| |||| || |||||| Sbjct 49533 CCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCGTGAGGCCGCGCTTC 49474 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | |||||| |||| || || ||||| ||||||||||| |||||||| |||||| Sbjct 49473 TTGAGCCAGAAGATCGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCCACGGTTGCGAAC 49414 Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACT-TTGTATCAAACCACTTCATCGCCCACTG 127716 | | | ||||| | | || || ||| | || ||||||| | |||||| || Sbjct 49413 GTCAGCACGCGCTCCGGGTACGA-CGACACTCGCGGGTCGCACCACTTGAGCGCCCAGTG 49355 Query 127717 TGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGA 127776 || || |||| | ||| |||| || | ||| || | || | | ||| || | Sbjct 49354 CGCTTTCTTCTTCACACACGGGATCGTATCGATGGCACGCAGCAGGTGGTCCTTCTCCGT 49295 Query 127777 TGGATCTTTGATGTACTTATCTATGAG 127803 | ||| ||||||||| | || ||||| Sbjct 49294 CGCATCCTTGATGTACGTGTCAATGAG 49268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613441677431040