Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1232 181 2e-40 seq6666 156 7e-33 >seq1232 Length=16645 Score = 181 bits (200), Expect = 2e-40 Identities = 416/614 (68%), Gaps = 23/614 (4%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCT---CAGATAGTACAT 203895 ||||||||| ||||||| ||||||| |||| | || || || |||||||| Sbjct 317 CTTGTCCACGGTGAACTTGATGGCGT---CGGCTTTCGGGCGTCCGCGCATGTAGTACAT 373 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 ||||||||| || ||||||| ||| |||| | |||||| || | || ||||| | | | Sbjct 374 GCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGACGTGAGCTTGCTGATGGT 433 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGC 204015 |||||||| ||||| ||||| || ||||| || ||| ||| | | | || || || Sbjct 434 CGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAATGTACGCACCGCGGTCGGC 493 Query 204016 GGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGT 204075 | || | | | | ||||||| |||||||||||||||||| || || || Sbjct 494 CGACAGGTCCAGCACCGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTCTCCTTGAC 553 Query 204076 GTGTTGAGGCA-CATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCT-CAT 204132 ||| | || | | ||| |||| ||| | |||||| ||||| || | ||| | Sbjct 554 GTGGTCCGGGATCGCCTT--GACGTTCTGCACGGAGCCGCTGTCGTTCAAGA-TCTGGTT 610 Query 204133 CCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGAT 204192 | | ||| | ||| ||||| | | |||||||||| || ||||| ||||| Sbjct 611 GCGCACGTCCGGCGTCCAGATGCCGAGCTCGATCAGCTCCTTCATCAGGTACTTGTTGAC 670 Query 204193 GATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAA 204252 |||| || ||||| | |||||| | ||| || ||| |||| ||| | || |||| Sbjct 671 GATCGTGAACTCTCCAGCCAGCACTCGGCGGTTGTACATGTTGGACGTGTACGGCTCGAT 730 Query 204253 CGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAG 204312 | ||||||||| || | ||||| || ||| ||||| |||||||| |||| ||||| Sbjct 731 AGACTCGTTGTTTCCAAGGATCTGGGCCGTGGAAGCCGTCGGCATGGGGGCCACCAGCAG 790 Query 204313 GGAGTTGCGCACACCGTATTTTTGGAC--CCTGCGCTTCAGAGAGGTCCAGTCGTGCAT- 204369 |||||||| | |||| || || ||| ||| || | | ||||| ||| Sbjct 791 CGAGTTGCGGAGTCCGTGCTTGATCACGTCCT--CCTTGAGCGTAGCCCAGTTCCACATA 848 Query 204370 --CG--CACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGC 204425 || || ||| | |||||||||||||||||||| |||||||| | || | || Sbjct 849 CCCGACGACGGGG--TGACGCCCCACATGTCGAACTGGAAGATGCCCTTGCTAGCGGGCG 906 Query 204426 TGCCCTTGTACGTC 204439 ||||| | ||||| Sbjct 907 AGCCCTGGAACGTC 920 >seq6666 Length=2405 Score = 156 bits (172), Expect = 7e-33 Identities = 475/726 (65%), Gaps = 15/726 (2%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||||||||| |||||||||| || || || ||||| | |||| ||||| Sbjct 1441 CTTCTCGAAAAAGTTCGTCTTGCCCTGCAGCGAGATCATGTCCATCCAGTCGAACGGGTT 1500 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 ||| |||| ||| ||||| | || || | ||||| | ||| ||||| || || Sbjct 1501 CTTTACGTTGTAGATCTTCGACACACCCAGCGAGTACAGCAGACGGTCGGCCACGAACTC 1560 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| ||||| || | |||| || || | |||| || ||||||| || Sbjct 1561 GATGTACTGGCACATGAGCCCCGAGTTCATGCCGATCAGCTCCACAGGGAGCGAGTCACG 1620 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAG-ACACGTTCGTACC 159887 || ||||| | ||| ||| ||||| ||| ||| |||| || | || || | | Sbjct 1621 CACGAACTCGTGCTCGATCGTCACCGCGTCGCGCACGATCT-CGTGCACGCGGCTCTCCG 1679 Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 | ||||| || | | | | ||| ||||||||| ||||| ||||| |||| Sbjct 1680 GCAGCTTGTTCACCAGCTTGGAGT---ACATGAGGCACGCGAAGTCCGTGTGCATGCCCT 1736 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 |||| || ||| | |||||| || | | | ||||| ||||||| || ||| |||| Sbjct 1737 CGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGA 1796 Query 160008 GCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACGCC 160066 |||| || |||| ||| || | | | | || ||||| |||||||| || || |||||| Sbjct 1797 GCCAGAAGATGG-AGCAGAACGAGCCCGAGAAGAAGATGCCCTCCACAGCTGCGAACGCC 1855 Query 160067 ACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTC-CACCTTTTG---GCCCATTC 160122 | || | ||| | || | || ||||| |||| ||| ||||| | Sbjct 1856 AGCAGACGCTCCGGGTACGACG----ACACTCGCGGGTCGCACCACTTGAGCGCCCAGTG 1911 Query 160123 AGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTT 160182 || ||||| | ||||| || |||| ||| | || ||||| |||| | Sbjct 1912 CGCTTTCTTCTTCACACACGGGATCGTATCGATGGCACGCAGCAGGTGGTCCTTCTCCGT 1971 Query 160183 CACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGAT 160242 | |||||||||| || |||| ||| ||| |||| |||| ||| | || ||||| Sbjct 1972 CGCATCCTTGATGTACGTGTCAATGAGCAGCGAATACACCTCTGAGTGGATGTTCTCGAT 2031 Query 160243 GGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACCT 160302 ||| ||||| || |||||| | |||||| | |||||| || | |||| | Sbjct 2032 GGCGATCTGGAAACCGTAGAAGCAGCGGGCCTCCGGCACCTGCACTTCATTGCTGAAGTT 2091 Query 160303 TTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGA 160362 |||| || | || || | |||||| ||| || ||||| |||| |||||| Sbjct 2092 CATGGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGAAGAAGGCCAGCACGTGCTT 2151 Query 160363 GATGAA 160368 |||||| Sbjct 2152 GATGAA 2157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795070277424640