Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq570 170 2e-37 seq132 168 8e-37 seq884 167 3e-36 seq1033 107 2e-18 >seq570 Length=29657 Score = 170 bits (188), Expect = 2e-37 Identities = 170/218 (78%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||||| |||| || |||||| ||||| ||||||||| || ||||| | Sbjct 29040 ACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC 28981 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || ||||||||||||||||| || | |||||||||||||| ||| | || |||||| Sbjct 28980 GTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTT 28921 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| ||||||| ||| | ||| | | | || ||| || ||||| || | ||||| Sbjct 28920 GTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGA 28862 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| |||||||||||||| || || ||||| |||||| Sbjct 28861 TGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATT 28824 Score = 170 bits (188), Expect = 2e-37 Identities = 170/218 (78%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||||| |||| || |||||| ||||| ||||||||| || ||||| | Sbjct 29268 ACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC 29209 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || ||||||||||||||||| || | |||||||||||||| ||| | || |||||| Sbjct 29208 GTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTT 29149 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| ||||||| ||| | ||| | | | || ||| || ||||| || | ||||| Sbjct 29148 GTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGCGTGA 29090 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| |||||||||||||| || || ||||| |||||| Sbjct 29089 TGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATT 29052 Score = 170 bits (188), Expect = 2e-37 Identities = 181/236 (77%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||| || || || | | ||||| |||||| |||| || |||||| ||||| ||||| Sbjct 29514 TTAGTTTCCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTA 29455 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 |||| || ||||| |||| || ||||||||||||||||| || | |||||||||||| Sbjct 29454 GTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTC 29395 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCG 46538 || ||| | || |||||||||| ||||||| ||| | ||| | | | || ||| || Sbjct 29394 GGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACG 29336 Query 46539 ATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 ||||| || | ||||||||| |||||||||||||| || || ||||| |||||| Sbjct 29335 GCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATT 29280 Score = 161 bits (178), Expect = 1e-34 Identities = 172/223 (77%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||||| |||| || |||||| ||||| ||||||||| || ||||| | Sbjct 28812 ACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGTGCGACC 28753 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || ||||||||||||||||| || | |||||||||||||| ||| | || |||||| Sbjct 28752 GTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTT 28693 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| ||||||| ||| | ||| | | | || ||| || ||||| || | |||| Sbjct 28692 GTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCGAGTGTGA 28634 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT-TTGC 46598 |||| |||||||||||||| || || || || |||||| |||| Sbjct 28633 TGGTCTTGCCCGTCAGCGTCTTGACGAAAATCTGCATTGTTGC 28591 >seq132 Length=78195 Score = 168 bits (186), Expect = 8e-37 Identities = 177/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| |||||| |||| || |||||| || || ||||||||| Sbjct 54787 TGCCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGC 54728 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| |||| || ||||||||||| ||||| |||| ||||||||||| | || Sbjct 54727 TCAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCG 54668 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCC 46543 | | || |||||||||| |||||||| ||||| ||| | | | || ||| || ||| Sbjct 54667 GGATGCCCTCCTTGTCCTGGATCTTCTGCTTGA-CGTTGTCGATCGAGTCCGACGGCTCC 54609 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| |||||| || |||||||||||||| || |||||||| ||||| Sbjct 54608 ACGTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 54559 Score = 168 bits (186), Expect = 8e-37 Identities = 177/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| |||||| |||| || |||||| || || ||||||||| Sbjct 55015 TGCCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGC 54956 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| |||| || ||||||||||| ||||| |||| ||||||||||| | || Sbjct 54955 TCAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCG 54896 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCC 46543 | | || |||||||||| |||||||| ||||| ||| | | | || ||| || ||| Sbjct 54895 GGATGCCCTCCTTGTCCTGGATCTTCTGCTTGA-CGTTGTCGATCGAGTCCGACGGCTCC 54837 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| |||||| || |||||||||||||| || |||||||| ||||| Sbjct 54836 ACGTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 54787 Score = 167 bits (184), Expect = 3e-36 Identities = 168/216 (78%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||| || || ||||||||| || ||||| || Sbjct 55229 CGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCG 55170 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| ||||| |||| ||||||||||| | ||| | || ||||||| Sbjct 55169 TCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTG 55110 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| |||||||| ||||| ||| | | | || ||| || ||||| |||| |||||| Sbjct 55109 TCCTGGATCTTCTGCTTGA-CGTTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGAT 55051 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||||||||||||| || |||||||| ||||| Sbjct 55050 CGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 55015 Score = 165 bits (182), Expect = 9e-36 Identities = 176/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| |||||| |||| || |||||| || || ||||||||| Sbjct 54559 TGCCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGC 54500 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| |||| || ||||||||||| ||||| |||| ||||||||||| | || Sbjct 54499 TCAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCG 54440 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCC 46543 | | || |||||||||| |||||||| ||||| ||| | | | || ||| || ||| Sbjct 54439 GGATGCCCTCCTTGTCCTGGATCTTCTGCTTGA-CGTTGTCGATCGAGTCCGACGGCTCC 54381 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| |||||| || |||||||||||||| || || ||||| ||||| Sbjct 54380 ACGTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 54331 >seq884 Length=21595 Score = 167 bits (184), Expect = 3e-36 Identities = 153/191 (80%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| |||||||| || || ||||| |||| |||||||||||||||||||| | Sbjct 4794 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 4853 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| ||||||||||| | ||| | || |||||||||| ||| |||| ||||| | | | Sbjct 4854 TCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGA-CATTG 4912 Query 46524 CCACCG-TGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 || | ||||| || ||||| |||| ||||||||| ||||||||||| || || ||| Sbjct 4913 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 4972 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 4973 AAGATCTGCAT 4983 >seq1033 Length=19618 Score = 107 bits (118), Expect = 2e-18 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | |||||| |||| || |||||||| ||||| |||||||| || || ||||| | Sbjct 11450 ACGAAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCC 11509 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 ||| || ||||||||||||||||| |||| |||||||||||| Sbjct 11510 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 11551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565178032538880