Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1232 174 2e-38 seq6666 129 7e-25 seq92 111 2e-19 >seq1232 Length=16645 Score = 174 bits (192), Expect = 2e-38 Identities = 367/538 (68%), Gaps = 11/538 (2%) Strand=Plus/Minus Query 111705 TTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGT 111764 |||| || || || || || || || ||||| || || || | || ||| |||| | Sbjct 1987 TTCACGCATGCCACCCCGACACTTTTTAACGCCGGCACGCCGCGCCCACAACTGTCGTCT 1928 Query 111765 TGTTTCCTTATTG--CAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTG 111822 || ||||| |||| || |||| | || ||||| | |||||||||| ||| | | Sbjct 1927 TGCTTCCT-ATTGGCCATGCAAG-ACGACTCAATTGAAGGCATTTACGACACGTTAAAGC 1870 Query 111823 AATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAG 111882 |||||||| ||||| || ||||| || ||||| || || || || | || ||| Sbjct 1869 AATGTGCCTGTATCTCTAAATGGGCCGGAGGTATTGGCATCAGTATGCACAACATCCGAG 1810 Query 111883 CCAACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTC 111942 ||| ||| || |||| || || || || |||| || || || ||||| | Sbjct 1809 CCACCAACAGCTACATCCGAGGCACGAACGGCTCGTCCAATGGCATCATCCCCATGCTGC 1750 Query 111943 GCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTA 111999 | || ||||||| ||| ||||| || || |||| | || | || ||||| || Sbjct 1749 GGGTGTTTAACGACACCGCGCGGTACGTGGACCAGGGCGGAGGCAAGCGTAAGGGCTCCT 1690 Query 112000 TCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCA 112059 |||| ||||| | ||||| |||||||| ||| | | |||||| | || | ||| | Sbjct 1689 TCGCCATCTATTTGGAGCCTTGGCACGCAGATGTGTTCGAGTTCTTGGACCTCCGTAAGA 1630 Query 112060 ACCAAGGTGATGAGGAGGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGAT 112118 |||| || | ||| | | | | || ||||| || |||| ||| || ||| | || ||| Sbjct 1629 ACCACGGCAACGAGTTG-CACCGCGCTCGCGACCTGTTCTACGCCCTTTGGGTGCCTGAT 1571 Query 112119 CTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCA 112178 || ||||||||||| || || | | |||||| ||| ||||| ||| || || |||| Sbjct 1570 CTGTTCATGAAGAGGGTGGAAGCCAATGGCAAGTGGAGTCTCTATTGCCCTAACGAGGCC 1511 Query 112179 CCCGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAG 112235 || || |||| || ||| | ||| || || || || |||||||| |||||||||| Sbjct 1510 CCTGGACTCTATGAGTGCTG-GGGCGACGAATTCGAGGCCCTCTATGAAAAGTACGAG 1454 >seq6666 Length=2405 Score = 129 bits (142), Expect = 7e-25 Identities = 192/270 (71%), Gaps = 8/270 (3%) Strand=Plus/Minus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 102107 ||||| |||| ||| || ||||||| | |||||| | || || | |||||| | Sbjct 1998 CTCATTGACACGTACATCAAGGATGCGACGGAGAAGGACCACCTGCTGCGTGCCATCGAT 1939 Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATAC---AAAG 102164 || | || ||| | | ||||||||| | ||||| | ||||||| || | | | Sbjct 1938 ACGATCCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGAGTG 1879 Query 102165 TCG-CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 102223 ||| ||| || | ||||| || | || || || ||| ||||| ||||||||||| Sbjct 1878 TCGTCGTACC----CGGAGCGTCTGCTGGCGTTCGCAGCTGTGGAGGGCATCTTCTTCTC 1823 Query 102224 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 102283 || || |||||| | || | |||||||||||||| || |||||||| || || |||| Sbjct 1822 GGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTT 1763 Query 102284 CTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 ||| |||||||| ||| ||||||||||| Sbjct 1762 CTCGAACGAGCTGATCAGCCGTGACGAGGG 1733 >seq92 Length=63871 Score = 111 bits (122), Expect = 2e-19 Identities = 188/270 (70%), Gaps = 8/270 (3%) Strand=Plus/Plus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 102107 ||||| |||| ||| || ||||||| | |||||| | || || | |||||| | Sbjct 49268 CTCATTGACACGTACATCAAGGATGCGACGGAGAAGGACCACCTGCTGCGTGCCATCGAT 49327 Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATAC---AAAG 102164 || | || ||| | | ||||||||| | ||||| | ||||||| || | | | Sbjct 49328 ACGATCCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGAGTG 49387 Query 102165 TCG-CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 102223 ||| ||| || | ||||| | | | || || || ||||| ||||||||||| Sbjct 49388 TCGTCGTACC----CGGAGCGCGTGCTGACGTTCGCAACCGTGGAGGGCATCTTCTTCTC 49443 Query 102224 TGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT 102283 || || |||||| | || | |||||||||||||| || |||| ||| || || |||| Sbjct 49444 GGGCTCGTTCTGCTCGATCTTCTGGCTCAAGAAGCGCGGCCTCACGCCTGGCCTGAGCTT 49503 Query 102284 CTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 ||| |||||||| ||| ||||||||||| Sbjct 49504 CTCGAACGAGCTGATCAGCCGTGACGAGGG 49533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620676104711680