Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1232 141 1e-28 seq1108 136 5e-27 seq6666 96.9 4e-15 seq3608 86.0 7e-12 seq347 82.4 9e-11 >seq1232 Length=16645 Score = 141 bits (156), Expect = 1e-28 Identities = 647/1006 (64%), Gaps = 39/1006 (4%) Strand=Plus/Plus Query 110092 AGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTA 110151 || |||||| | ||||| || ||||| || || | ||| |||||||| || |||||| Sbjct 1041 AGGATAAACGCGTCCGCGAGGCCCTGGACGCCAATACCGATGGGGCGGTGACGCATGTTG 1100 Query 110152 GAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTC 110211 || || || |||||||| ||||| |||||||||| || | || Sbjct 1101 GACTTGCGCGCCTCGATCACGGGGTAGTAGTTGACGTCGATGACCTTGTTTAAGTTGCGG 1160 Query 110212 GTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTG 110271 || || |||||| | ||||| | || | ||| | ||| |||||| | Sbjct 1161 GTGACCACCTTCGTCACTTCATACAACTTCTGGTAGTTGAAAA-------CTCCTTCCTC 1213 Query 110272 -ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCG-- 110328 || | || || || || | |||||| | |||||||||| |||||| | || Sbjct 1214 CACGAACTTAGGCAGCGCCACAGACGCCAAGTTGCACACAGCCACCTCGTCC--GGCGAC 1271 Query 110329 GTGTATTCCAAAATTTCCGTACACAAGTTG---GAACTCTTAATGACACCCAAGTTCTTC 110385 ||||| |||| | || || |||||| || | | || || | ||||||| Sbjct 1272 GTGTACTCCATCACCTCACAGCATAAGTTGCTGGAGCGGATCGTG---CCGAGGTTCTTC 1328 Query 110386 TGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTC 110445 || ||||| ||| |||| || ||||| || | ||| | || || || || || Sbjct 1329 TGGTTCGACTTGCGGTTGGCCGCGTCCTTGTACAACATAAAGGGCACTCCCGTCTCAATC 1388 Query 110446 TGTGACTTGAGAATGGCCTTCCATACATCGGC--GGCGGGGACAGT--TGCGTTAGCGAG 110501 || | | | ||||| ||| || | || |||| || || |||| ||| | Sbjct 1389 TGGGCGTCCAATATGGCGAACCA--CAGCTGCTGGGCGTTGATCGTCTTGCGG--GCGCG 1444 Query 110502 ACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTA-CACATCAGAAA 110560 || ||| ||||||||| || | | |||| ||||| | || | ||| ||| | | Sbjct 1445 TCCCTCCGTCTCGTACTTTTCATAGAGGGCCTCGAATTCGTCGCCCCAGCAC-TCATAGA 1503 Query 110561 GACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCA 110620 | || |||| || || || |||| ||| || ||| | || |||||||||| Sbjct 1504 GTCCAGGGGCCTCGTTAGGGCAATAGAGACTCCACTTGCCATTGGCTTCCACCCTCTTCA 1563 Query 110621 TGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACG-GCAACGAGCCTCTTCATCA 110679 ||||||| ||||| | ||| | || |||| ||||| || || | || | || | Sbjct 1564 TGAACAGATCAGGCACCCAAAGGGCGTAGAACAGGTCGCGAGCGCGGTGCAAC-TCGTTG 1622 Query 110680 CCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAG 110739 || ||||| || || ||||| || || | | ||| | |||||| || || | |||| Sbjct 1623 CCGTGGTTCTTACGGAGGTCCAAGAACTCGAACACATCTGCGTGCCAAGGCTCCAAATAG 1682 Query 110740 ACAGCGATGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTG 110796 | |||| ||| |||||||| | || |||||| || || || || ||| | || Sbjct 1683 ATGGCGAAGGAGCCCTTACGCTTGCCTCCGCCCTGGTCCACGTACCGCGCGGTGTCGTTA 1742 Query 110797 AAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGAC 110856 || |||| ||||| || || || |||| ||| || || || || | || | Sbjct 1743 AACACCCGCAGCATGGGGATGATGCCATTGGACGAGCCGTTCGTGCCTCGGATGTAGCTG 1802 Query 110857 TTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGT 110916 || |||| || |||| ||| ||| || |||||||| || ||||| ||| || Sbjct 1803 TTGGTGGCTCGGATGTTGTGCATACTGATGCCAATACCTCCGGCCCATTTAGAGATACAG 1862 Query 110917 GCACACT-CTGTGA-GTGTACCATAAATACCATCAATCGAATCTGCCTTG-TTGGCAATT 110973 ||||| | || | | |||| | ||||| || ||||| || || | |||| |||| | | Sbjct 1863 GCACATTGCTTTAACGTGT--CGTAAATGCCTTCAATTGAGTC-GTCTTGCATGGCCAAT 1919 Query 110974 AGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCA 111033 || |||||||| |||| || || || ||||| || || || || ||||| || || ||| Sbjct 1920 AGGAAGCAAGACGACAGTTGTGGGCGCGGCGTGCCGGCGTTAAAAAGTGTCGGGGTGGCA 1979 Query 111034 TGAATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGG 111079 || |||| | ||| ||||| | ||| || || || |||| Sbjct 1980 TGCGTGAAAAACATTTGCGACATAAGCTCGTACGTCTCCAGGGCGG 2025 >seq1108 Length=18210 Score = 136 bits (150), Expect = 5e-27 Identities = 340/510 (67%), Gaps = 15/510 (3%) Strand=Plus/Minus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| || ||||| ||||| || || || | || | |||||||||||| | ||||| Sbjct 14130 ATCTGCCGGTCGAATCGACCGGGACGCAGGATGGCCTTGTCAAGAATATCGGCGCGGTTC 14071 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAGA 11613 ||| | |||| || || | ||| |||| | || |||||| ||||| || || Sbjct 14070 GTACCAGCAAGCACCACCACGCC---CTCACTCGAGTTGAAACCATCCATCTCGACCAGC 14014 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTC 11673 | |||||| | ||| | ||||||||| |||||| | | | | |||| ||| | Sbjct 14013 AACTGGTTCAGCGTGTTTTCACGCTCGTCGTTGCCGCCCG-AGAAGTTGCCCTT-GCTAC 13956 Query 11674 TTAC-----CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTG 11728 | | | ||||||||||| ||||| ||||| ||||| ||||| || || || | Sbjct 13955 GTGCGCGGGCCACAGCGTCAATTTCATCAATGAACACGATGCACGGGGCATTTGCGCGCG 13896 Query 11729 CCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGT 11788 ||| | ||| || ||||| ||||| | || ||||| || |||||||| | ||| | Sbjct 13895 CCTCCTTGAACAGGTCACGCACACGGGATGGCCCCACACCGACAAACATCTCGATGAAAT 13836 Query 11789 TTGCGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGG 11847 | | || | ||||| ||| || ||| | | ||||||||| | || || || Sbjct 13835 CCGAACCCGAGATGCTGAA-GAAAGGTACACTGGCCTCACCAGCCGTAGCCTTCGCCAGC 13777 Query 11848 AGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA 11907 || |||||||||||||| || | || | || || || || ||||||||| ||||| Sbjct 13776 AGCGTCTTACCCGTACCGGGAGGTCCGACTAGCAGCGCACCCTTGGGGATCTTCGCACCG 13717 Query 11908 CTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTG 11967 || | |||||| | || || |||||||| | |||| | |||| |||| Sbjct 13716 AGCTCAGTGAAGCGCTTCTGGTTGCGAAGAAAGTCCACGAACTCCATGATCTCCTTCTTG 13657 Query 11968 GCGGAGTCGATACCCTCAACATCGGTGAAA 11997 || ||| | ||| | ||||| ||||| Sbjct 13656 GCCTCGTCCACACCGGCCACATCCTTGAAA 13627 >seq6666 Length=2405 Score = 96.9 bits (106), Expect = 4e-15 Identities = 174/253 (69%), Gaps = 5/253 (2%) Strand=Plus/Plus Query 119528 GATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCTTTAGCCAAAAGAT 119587 ||| ||||| || ||||| || ||||||||||| || | ||||| ||||| ||||| Sbjct 1747 GATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGAT 1806 Query 119588 GGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAGCGAATAGACGCTC 119647 || || || || || |||||||||||||||||| ||||| || | |||||||| Sbjct 1807 GGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCCACAGCTGCGAACGCCAGCAGACGCTC 1866 Query 119648 AGCAAAAGGTCGAGACT----TGTCGAACCACTTGAGAGCCCAGTTGGCCTTACGCTCTA 119703 | | | ||| ||| |||| |||||||||| ||||||| || || || | Sbjct 1867 CG-GGTACGACGACACTCGCGGGTCGCACCACTTGAGCGCCCAGTGCGCTTTCTTCTTCA 1925 Query 119704 TGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTTTCAGCACCATCCTTAATAT 119763 || |||| || | |||||| | || || | ||| || | ||||||| || | Sbjct 1926 CACACGGGATCGTATCGATGGCACGCAGCAGGTGGTCCTTCTCCGTCGCATCCTTGATGT 1985 Query 119764 ATTTATCAATGAG 119776 | | |||||||| Sbjct 1986 ACGTGTCAATGAG 1998 >seq3608 Length=5049 Score = 86.0 bits (94), Expect = 7e-12 Identities = 294/446 (66%), Gaps = 13/446 (3%) Strand=Plus/Minus Query 11551 CGGTTTGTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCT 11607 ||||| ||||||||||| || | || ||| | |||| ||||| || ||||| ||| Sbjct 1678 CGGTTCGTAGCGGCAATAACGATAACTCCATTGGCATTTCCTTCGAAGCCATCCATCTCT 1619 Query 11608 GTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAA 11667 || || | |||||| | ||| || || || |||||||| ||| | ||| || | ||| Sbjct 1618 GTCAGCAACTGGTTTAGCGTTTGCTCCCGTTCATCGTTTGAGTTGA-ACCCCCCG-CGAG 1561 Query 11668 CGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGT-TGGCACG 11726 | |||| || || || || || |||||||| || | ||||||| | ||| || | Sbjct 1560 C-CTTC--GCCAAC-GCATCGATTTCATCGATAAAGATGATACACTGCGGGTACTGCGAG 1505 Query 11727 TGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAA 11786 ||||| ||| || || || || | | || || |||||| | |||||| || || Sbjct 1504 -GCCTGCGTGAAGAGGTCTCGCACTCTCGCAGCGCCTCGACCTACCAGCATCTCCACAAA 1446 Query 11787 GTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAG 11846 | | || ||||| | ||||| || | ||| || | |||| ||| || Sbjct 1445 ATCCGATGCTGAACAGAACAAGAAGGCCACCCCCGCTTCAGATGCAACAGCTCTAGCTAG 1386 Query 11847 GAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 || || || || || || | || |||| ||| | | || || | |||||| || Sbjct 1385 CAGCGTTTTGCCTGTGCCCGATGGACCACAGAGCATCACTCCTTTAGGCACCTTGGCGCC 1326 Query 11907 ACTTCCAAAGTAGC-GCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCT 11965 | | | ||| | | || || || | | ||||||||| | |||||| || |||| | Sbjct 1325 AATGGCCTGGTACCTGGTCGGGTGTC-TCAAGAAGTCCACGACCTCCTCCAGCTCCTTCC 1267 Query 11966 TGGCGGAGTCGATACCCTCAACATCG 11991 |||| ||| |||||| | |||||| Sbjct 1266 GGGCGCCGTCAATACCCGCCACATCG 1241 >seq347 Length=38231 Score = 82.4 bits (90), Expect = 9e-11 Identities = 117/163 (72%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 168430 TTACCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGACA 168489 ||||| || | || || || ||||| | |||||| || || |||| ||||| | ||| Sbjct 28479 TTACCGCGCAACGGGAAGACACCATAGTAATCTCTGCCAACCACGGCAAGACCGCCCACA 28538 Query 168490 GCGAGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACACTTTCCAGACTGT--G 168547 |||| ||||| || ||||| || || || | ||| || || || | || || | | Sbjct 28539 GCGACGGTTTTGGCGGAATCTCCTTCCGTGAGGATCAGAGTGCAGT--CCTTGCTCTTCG 28596 Query 168548 CCGTACCAGCTTTGTTCGCATCGTCCAATTTGGGGATACCAGT 168590 |||||||||| ||||| ||||| |||| || ||||| || || Sbjct 28597 CCGTACCAGCGTTGTTGGCATCATCCAGCTTAGGGATGCCCGT 28639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588913097363200