Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq6666 118 1e-21 seq92 100 3e-16 seq2817 87.8 2e-12 >seq6666 Length=2405 Score = 118 bits (130), Expect = 1e-21 Identities = 379/576 (66%), Gaps = 14/576 (2%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| || ||||| ||||| || | || || | ||||| Sbjct 1427 TACTCGCCCACGCGCTTCTCGAAAAAGTTCGTCTTGCCCTGCAGCGAGATCATGTCCATC 1486 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCAC-CCCAACTTGTTTGAGGAGACG 117104 |||| || || ||||| |||| | || | ||| |||| | || || ||||| Sbjct 1487 CAGTCGAACGGGTTCTTTACGTTGTAGATCTTCGACACACCCAGCGAGTAC-AGCAGACG 1545 Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATT-AC 117163 || | ||| |||| ||||||| | |||| | | |||||||| ||||| || | || Sbjct 1546 GTCGGCCACGAACTCGATGTACTGGCACATGAGCCCCGAGTTCATGCCGATCAGCTCCAC 1605 Query 117164 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 117223 | ||||| | ||| | |||| | | ||| ||| ||||| || |||||| ||| Sbjct 1606 A-GGGAGCGAGTCACGCACGAACTCGTGCTCGATCGTCACCGCGTCGCGCACGATCTCGT 1664 Query 117224 GGATAGT----TTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAAC 117279 | | | ||| || || | | || | | | ||| |||| | || Sbjct 1665 GCACGCGGCTCTCCGGCAGCTTGTTCACCA-GCTTGGAGTACATGAGG--CACG-CGAAG 1720 Query 117280 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATG 117339 ||| ||| | ||||| || ||| || || || || ||||||| ||||| |||||| Sbjct 1721 TCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATG 1780 Query 117340 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 117399 || || |||||||| | ||| | || | |||||| || || ||||||||||| |||||| Sbjct 1781 AGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCC 1840 Query 117400 ACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACT-TTGTGTCAAACCATTT 117458 ||| || ||||| | || ||||| | | | || ||| ||| | ||| |||| || Sbjct 1841 ACAGCTGCGAACGCCAGCAGACGCTCCGGGTACGA-CGACACTCGCGGGTCGCACCACTT 1899 Query 117459 CATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTG 117518 | ||||| | ||| ||||||| | ||| || | || | |||||| | | || Sbjct 1900 GAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGATCGTATCGATGGCACGCAGCAGGTG 1959 Query 117519 CTTCTTTTCAGATCCATCCTTAATGTATTTGTCAAT 117554 | ||| || | ||||||| ||||| ||||||| Sbjct 1960 GTCCTTCTCCGTCGCATCCTTGATGTACGTGTCAAT 1995 >seq92 Length=63871 Score = 100 bits (110), Expect = 3e-16 Identities = 193/282 (68%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 || || ||| ||| | ||||| || ||| || || || || ||||||| ||||| Sbjct 49551 GCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCA 49492 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||| |||| || |||||||| | ||| | || | |||||| || || ||||||||||| Sbjct 49491 GGCGTGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGAGCCCGAGAAGAAGATG 49432 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACT-TTGTGTCAAA 117452 |||||||| || |||| | | |||||| | | | || ||| ||| | ||| | Sbjct 49431 CCCTCCACGGTTGCGAACGTCAGCACGCGCTCCGGGTACGA-CGACACTCGCGGGTCGCA 49373 Query 117453 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 117512 ||| || | ||||| | ||| ||||||| | ||| || | || | |||||| | Sbjct 49372 CCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGATCGTATCGATGGCACGCAG 49313 Query 117513 TAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAAT 117554 | || | ||| || | ||||||| ||||| ||||||| Sbjct 49312 CAGGTGGTCCTTCTCCGTCGCATCCTTGATGTACGTGTCAAT 49271 >seq2817 Length=7496 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||||||| ||||| |||| | |||| ||||||||||||||| | | || |||||||||| Sbjct 3009 GCTCTTATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGCGATCCGGGTTCAAATC 3068 Query 136224 CAGGTAGGAGCTT 136236 | ||||||||||| Sbjct 3069 CCGGTAGGAGCTT 3081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589917790050560