Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1232 358 1e-93 seq6666 246 6e-60 seq92 192 1e-43 >seq1232 Length=16645 Score = 358 bits (396), Expect = 1e-93 Identities = 1226/1892 (65%), Gaps = 83/1892 (4%) Strand=Plus/Plus Query 212595 TAGTACATGCCGGTCTTTAGGCCCTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTC 212654 ||||||||||||||||| || ||||| |||| ||| | |||||| | ||||| || Sbjct 366 TAGTACATGCCGGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATCGACGTGAGCTT- 424 Query 212655 TTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAGATGTAG--GTTCAGGGACTGACTCT 212712 ||| | | || |||| ||| ||||| | ||| || |||||||||| Sbjct 425 ----GCTGA-TGGTCGGGTC--------GGC---GATGTGGATGTTGAGCGACTGACTCT 468 Query 212713 GGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCC 212772 || ||| | | | | ||| || | || ||| | | | |||| || ||||| Sbjct 469 GGCAAATGTACGCACCGCGGTCGGCCGACAGGTCCAGCACCGCCTTCTGCTTGATCTCCC 528 Query 212773 ACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACC 212832 |||| |||||| | | || |||| || || |||| | || ||||||||| || | Sbjct 529 ACACCGTCTTGTACTTCTCCTTGACGTGGTCCGGGATCGCCTTGACGTTCTGCACGGAGC 588 Query 212833 CCCTGTGTATGGTCAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTC---CA 212889 | |||| | | ||| ||||| |||| |||||| ||| | ||| || Sbjct 589 CGCTGTCGTTCAAGATCTGGTTGCGCACGTCCGGCGTCCAGATGCC---GAGCTCGATCA 645 Query 212890 GGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGT 212949 | ||| | ||||| |||||| ||| ||| || || | ||||| | | | || Sbjct 646 GCTCCTTCATCAGGTACTTGTTGACGATCGTGAACTCTCCAGCCAGCACTCGGCGGTTGT 705 Query 212950 AAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGG 213009 | | ||| || ||||| |||||||| ||||||||| || || ||||| || ||| | Sbjct 706 ACATGTTGGACGTGTACGGCTCGATAGACTCGTTGTTTCCAAGGATCTGGGCCGTGGAAG 765 Query 213010 CTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGG--CG 213067 | || |||||||| |||||||| || ||| | | |||||||| | || | | | Sbjct 766 CCGTCGGCATGGGGGCCACCAGCAGCGAGTTGCGGAGTCCGTGCTTG---ATCACGTCCT 822 Query 213068 CCGA-AGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGT 213126 || ||| ||||||| ||| | || ||| | | || ||| |||||||| Sbjct 823 CCTTGAGCGTAGCCCAGTTCCACATACCCGAC--GACGGGGTG----ACGCCCCACATGT 876 Query 213127 CAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCT 213186 | ||||| |||||||| ||||| |||| ||||||| | | ||| ||||| | | Sbjct 877 CGAACTGGAAGATGCCCTTGCTAGCGGGCGAGCCCTGGAACGTCTCGTACGGGCCGAGTT 936 Query 213187 CCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCC 213246 ||||||| | ||| |||| || || ||| ||| |||||||||| || || || | | Sbjct 937 CCTTGGCGATCTCCATCGACGTCTCCATGGCGGCGAAGTAGATGGTCTCGAAGATGTTCT 996 Query 213247 TGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAG 213306 ||||||||| | ||||| | | ||| | ||||| | ||| | || | Sbjct 997 TGTTGAGCTCCCGGGCCTTCTCGCTCTCGAACGCGTAGTTCATGAGGATAAACGCGTCCG 1056 Query 213307 CCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCC 213365 | || |||||||| || || |||||||| | ||| | || ||| |||||| | || ||| Sbjct 1057 CGAGGCCCTGGACGCCAATACCGATGGGGCGGTGACGCATGTTGGACTTGCGCGC-CTCG 1115 Query 213366 TCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTG 213425 || |||||| ||||| |||||||| |||||| | |||||||||| |||| || || Sbjct 1116 ATCACGGGGTAGTAGTTGACGTCGATGACCTTGTTTAAGTTGCGGGTGACCACCTTCGTC 1175 Query 213426 ACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGG 213485 || | || | || || ||||| || || |||| ||| |||| |||||| Sbjct 1176 ACTTCATACAACTTCTGGTAGTTGAAAACT------CCTTCCTCCACGAACTTAGGCAGC 1229 Query 213486 GCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCG 213545 || | |||| |||||| || |||||||| | | ||||||||||| | ||| Sbjct 1230 GCCACAGACGCCAAGTTGCACACAGCCACCTCGTCCGGCGACGTGTACTCCATCACCTCA 1289 Query 213546 GTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA 213605 ||| | ||||||| | ||||| ||||| ||||||| ||||| ||||| |||||| Sbjct 1290 CAGCATAAGTTGCTGGAGCGGATCGTGCCGAGGTTCTTCTGGTTCGACTTGCGGTTGGCC 1349 Query 213606 GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTC 213665 | |||||||| | ||| |||| || ||||| | ||||| ||| ||| | | Sbjct 1350 GCGTCCTTGTACAACATAAAGGGCACTCCCGTCTCAATCTGGGCGTCCAATATGGCGAAC 1409 Query 213666 CAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCG 213725 || || | | ||| |||| | | | | | ||| ||| |||||||| ||| Sbjct 1410 CACAGCTGCTGGGCGTTGATCGTCTTGCGGGCGCGTCCCTCCGT---CTCGTACTTTTCA 1466 Query 213726 TAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCG---GGA 213782 ||||| | | |||||||| ||||||| | | ||||| || || || || Sbjct 1467 TAGAGGGCCTCGAATTCGTCGCCCCAGCACTCATAGAGTCCAGG---GGCCTCGTTAGGG 1523 Query 213783 CACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCAC 213842 || ||| ||||| | || | || || |||| ||||||||| || || ||||| Sbjct 1524 CAATAGAGACTCCACTTGCCATTGGCTTCCACCCTCTTCATGAACAGATCAGGCACCCAA 1583 Query 213843 AGCGCGGTGAACAGGTCCCTGGTCC---TCCTCTCGTCCACTCCAGAGTTTTTGCGCAGA 213899 || ||| ||||||||| | | | | ||||| || ||| || || || Sbjct 1584 AGGGCGTAGAACAGGTCGCGAGCGCGGTGCAACTCGT---TGCCGTGGTTCTTACGGAGG 1640 Query 213900 TCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGC 213959 || | || || || | || |||||||| ||||||| |||||||| |||| |||| Sbjct 1641 TCCAAGAACTCGAACACATCTGCGTGCCAAGGCTCCAAATAGATGGCGAAGGAGCCCTTA 1700 Query 213960 CTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGT 214016 | |||| |||||||||||||| || || ||| || | ||||| | ||| Sbjct 1701 CGCTTGCCTCCGCCCTGGTCCACGTACCGCGCGGTGTCGTTAAACACCCGCAGCATGGGG 1760 Query 214017 ACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTG 214076 | | || |||||| ||||| || || || || | || ||| | | |||| Sbjct 1761 ATGATGCCATTGGACGAGCCGTTCGTGCCTCGGATGTAGCTGTTGGTGGCTCGGATGTTG 1820 Query 214077 CTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTC 214136 ||| || || || || ||||| | || ||||| ||| || || | | || Sbjct 1821 TGCATACTGATGCCAATACCTCCGGCCCATTTAGAGATACAGGCACATTGCTTTAACGTG 1880 Query 214137 TCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGG 214196 || ||||| | || ||| ||| | | || | |||||| ||| || || Sbjct 1881 TCGTAAATGCCTTCAATTGAGTCGTCTTGCATGGCCAATAGGAAGCAAGACGACAGTTGT 1940 Query 214197 GGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAG 214256 || | | || ||| | ||| ||||| || ||| ||||||| | | |||| | | || Sbjct 1941 GGGCGCGGCGTGCCGGCGTTAAAAAGTGTCGGGGTGGCATGCGTGAAAAACATTTGCGAC 2000 Query 214257 AGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCAC 214316 | ||| ||| ||||||||| | | | |||| | ||||||||| || || ||| Sbjct 2001 ATAAGCTCGTACGTCTCCAGGGCGGCCGCAATGTTGCTCTTGTGGATGCCAAGTGC-CAC 2059 Query 214317 -CTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTTTGGGGCCCTT------GAGCAG 214369 | ||| | ||| ||||| || | ||| | |||| ||| || || || Sbjct 2060 GCGCATAATCATTTGCTGCGGACGCTCCA---CCACTTT---GCCGTTTACGCGGAAGAG 2113 Query 214370 GTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAGGAGTAGGTATGATCGTTCC---CGTG 214426 ||| |||||| ||||| || |||||||||||| ||| || | || || |||| Sbjct 2114 GTACCCGCGCTCGAGAGTTTTAAACCCAAAGTAGTCGTA---ATCAAAGTCCCGGTCGTG 2170 Query 214427 TATGAGGGCAGCGTCCAGCTCTTCCGCGTGCT 214458 |||| ||| | || |||||| ||| ||||| Sbjct 2171 GATGATGGCCGAGTTCAGCTCGTCCTTGTGCT 2202 >seq6666 Length=2405 Score = 246 bits (272), Expect = 6e-60 Identities = 560/838 (67%), Gaps = 11/838 (1%) Strand=Plus/Plus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || ||||| | ||||| || ||||| ||||| |||| || |||||| | ||||| Sbjct 1426 GTACTCGCCCACGCGCTTCTCGAAAAAGTTCGTCTTGCCCTGCAGCGAGATCATGTCCAT 1485 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || ||| ||||| | ||| || | | | || |||| | | |||||| | Sbjct 1486 CCAGTCGAACGGGTTCTTTACGTTGTAGATCTTCGACACACCCAGCGAGTACAGCAGACG 1545 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021 || || ||| |||||||||| | ||||||| ||||||||| || || ||| Sbjct 1546 GTCGGCCACGAACTCGATGTACTGGCACATGAGCCCCGAGTTCATGCCGATCAGCTCCAC 1605 Query 48022 GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTT 48081 || | | | | ||||| | ||| ||| ||| || || | ||| |||| | Sbjct 1606 AGGGAGCGAGTCACGCACGAACTCGTGCTCGATCGTCACCGCGTCGCGCACGATCTCGTG 1665 Query 48082 AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTC 48141 |||||| ||| | | ||||| ||| ||||| || | | ||| || ||||| Sbjct 1666 CACGCGGCTCTCCGGCAGCTTGTTCACCAG---CTTGGAGTACATGAGGCACGCGAAGTC 1722 Query 48142 CCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGAC 48201 | |||||| ||| ||||| |||||||| ||| |||| ||||||| || |||||||||| Sbjct 1723 CGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCCAGGCATGAG 1782 Query 48202 CCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCAC 48261 || | || ||||||||||| || | ||| ||||| |||||||||||||||||||| Sbjct 1783 GCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCCAC 1842 Query 48262 TGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG-CGTTCTTGTCTGAGATCCAGGAAA 48320 || |||||||| || | ||| | | || | | || | | | ||| | Sbjct 1843 AGCTGCGAACGCCAGCAGACGCTCCGGGTACGACGACACTCGCGGGT-CGCACCACTTGA 1901 Query 48321 GCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCT 48380 ||||||||| || |||||||| | || || ||||| || ||||| || | || | | Sbjct 1902 GCGCCCAGTGCGCTTTCTTCTTCACACACGGGATCGTATCGATGGCACGCAGCAGGTGGT 1961 Query 48381 TGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAGAGT 48437 ||| || ||| | || || | |||||||| | |||| ||| |||| Sbjct 1962 CCTTCTCCGTCGCATCCTTGATGTACGTGTCAATGAGCAGC---GAATACACCTCTGAGT 2018 Query 48438 GCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTT 48497 | | ||||| || ||||||||||| ||||||||| | |||||| ||||||||||| Sbjct 2019 GGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGGGCCTCCGGCACCTGCACTT 2078 Query 48498 CTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGG 48557 | || ||| || ||| ||||| || || || || || ||||| ||||||| Sbjct 2079 CATTGCTGAAGTTCATGGCCAGGTTCTCGTTCACGATGCCGTCGCTGGCAGCGAAGAAGG 2138 Query 48558 CAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGT 48617 | || || || || | ||| |||||||||| || || |||| ||| | || Sbjct 2139 CCAGCACGTGCTTGATGAAGAACCGCTCGTTGTCCGTCAGGTTCGCCCAGTCCTTGAGGT 2198 Query 48618 CTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACAT 48675 | | ||||||||| || || | |||||||| ||||| || || |||||||| Sbjct 2199 CGTGCACCAGGTCCAGCTCCTCGGCCGTCCAGAATGACGCCTCCGCCTTCTTGTACAT 2256 >seq92 Length=63871 Score = 192 bits (212), Expect = 1e-43 Identities = 485/730 (66%), Gaps = 17/730 (2%) Strand=Plus/Minus Query 47953 CAGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTAT 48012 |||||| | || || ||| |||||||||||| ||||||| | ||||||||| || Sbjct 49729 CAGCAGACGGTCGGCCACGAACTCGATGTATTGGCACATGAGCGCCGAGTTCATGCCGAT 49670 Query 48013 GAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCAC 48072 ||| || | | | | ||||| | ||| ||| ||| | || | ||| Sbjct 49669 CGACTCCACAGGGAGCGAGTCACGCACGAACTCGTGCTCGATCGTCACCCCGTCGCGCAC 49610 Query 48073 AATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCA 48132 |||| | |||||| | | | | ||||| ||| ||||| || | | || Sbjct 49609 GATCTCGTGCACGCGGCTCCCCGGCAGCTTGTTCACCAG---CTTGGAGTACATGAGGCT 49553 Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192 || |||||| |||||| ||| ||||| |||||||| ||| |||| ||||||| || || Sbjct 49552 CGCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGAAGCTCAGGCC 49493 Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252 |||| ||| || | || ||||||||||| || | ||| ||||| ||||||||||| Sbjct 49492 AGGCGTGAGGCCGCGCTTCTTGAGCCAGAAGATCGAGCAGAACGAGCCCGAGAAGAAGAT 49433 Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGC-CTCTCTCC--GAAAGAAG-CGTTCTTGTCTG 48308 ||||||||| | |||||| || ||| | | |||| | | || | | || | | Sbjct 49432 GCCCTCCACGGTTGCGAAC---GTCAGCACGCGCTCCGGGTACGACGACACTCGCGGGT- 49377 Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCC 48368 | ||| |||||||||| || |||||||| | || || ||||| || ||||| | Sbjct 49376 CGCACCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGATCGTATCGATGGCAC 49317 Query 48369 GGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGT 48425 | | || | | ||| || ||| | || || | |||||||| | | Sbjct 49316 GCAGCAGGTGGTCCTTCTCCGTCGCATCCTTGATGTACGTGTCAATGAGCAGC---GAAT 49260 Query 48426 ACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAA 48485 ||| ||| ||||| | ||||| || ||||||||||| ||||||||| | |||||| Sbjct 49259 ACACCTCTGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGCGGGCCTCCG 49200 Query 48486 ACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAG 48545 |||||||||||| || ||| || ||| ||||| || || || || || | Sbjct 49199 GCACCTGCACTTCATTGCTGAAGTTCATGGCCAGGTTCTCGTTCACGATGCCGTCGCTGG 49140 Query 48546 CAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCC 48605 |||| |||||||| || || || || | ||| |||||||||| || || || Sbjct 49139 CAGCGAAGAAGGCCAGCACGTGCTTGATGAAGAACCGCTCGTTGTCCGTCAGGTTCGCCC 49080 Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665 || ||| | ||| | ||||||||| || || | |||||||| || || |||| Sbjct 49079 AGTCCTTCAGGTCGTGCACCAGGTCCAGCTCCTCGGCCGTCCAGAACGAGGCCTCCGCTT 49020 Query 48666 TTTTGTACAT 48675 | |||||||| Sbjct 49019 TCTTGTACAT 49010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931433312296960