Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq6666 221 2e-52 seq92 174 3e-38 seq1232 127 4e-24 >seq6666 Length=2405 Score = 221 bits (244), Expect = 2e-52 Identities = 559/847 (66%), Gaps = 19/847 (2%) Strand=Plus/Minus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| |||||||||||||||| | ||| |||||| ||||| ||| | || |||| Sbjct 2262 TGGCAGATGTACAAGAAGGCGGAGGCGTCATTCTGGACGGCCGAGGAGCTGGACCTGGTG 2203 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTG 25599 | ||| | | | |||| || | | |||||| | || ||||| ||||| Sbjct 2202 CACGACCTCAAGGACTGGGCGAACCTGACGGACAACGAGCGGTTCTTCATCAAGCACGTG 2143 Query 25600 TTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACC 25659 |||| ||||| || ||| || || || ||||||||||| ||| | || |||| | Sbjct 2142 CTGGCCTTCTTCGCTGCCAGCGACGGCATCGTGAACGAGAACCTGGCCATGAACTTCAGC 2083 Query 25660 AGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAAT 25719 | ||||||||| ||||||| || ||||||||||||||||| |||||||| || Sbjct 2082 AATGAAGTGCAGGTGCCGGAGGCCCGCTGCTTCTACGGTTTCCAGATCGCCATCGAGAAC 2023 Query 25720 GTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGTCGCCGAG 25776 | ||||| ||||||||| | ||| || || |||||||| | || | | ||| Sbjct 2022 ATCCACTCAGAGGTGTATTC---GCTGCTCATTGACACGTACATCAAGGATGCGACGGAG 1966 Query 25777 AGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGG 25836 | || | ||| | |||||||||| || || | | |||| ||| |||| ||| Sbjct 1965 AAGGACCACCTGCTGCGTGCCATCGATACGATCCCGTGTGTGAAGAAGAAAGCGCACTGG 1906 Query 25837 GCCATGAAGTGGATC-AACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGC 25895 || | |||||| | | | || || | | ||| ||||| ||| | || || || Sbjct 1905 GCGCTCAAGTGGTGCGACCCGCGAGTG-TCGTCGTACCCGGAGCGTCTGCTGGCGTTCGC 1847 Query 25896 TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAGA 25954 ||||||||||||||||| ||| || ||||| ||| ||||||||||||||||| || Sbjct 1846 AGCTGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGC-TCCATCTTCTGGCTCAAGAAGC 1788 Query 25955 AGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCC 26014 || |||||| || ||| ||| || |||||||| |||||| | |||||||| | | Sbjct 1787 GCGGCCTCATGCCTGGCCTGAGCTTCTCGAACGAGCTGATCAGCCGTGACGAGGGCATGC 1728 Query 26015 ACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAGA 26074 ||| || || || ||||| | ||| | | | || | || || || | |||| Sbjct 1727 ACACGGACTTCGCGTGCCTCATGTACTC---CAAGCTGGTGAAC-AAGCTGCCGGAGAGC 1672 Query 26075 C-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNN 26133 | ||| || ||| | || || ||| ||||||| | ||||| Sbjct 1671 CGCGTGCACGAGATCGTGCGCGACGCGGTGACGATCGAGCACGAGTTCGTGCGTGACTCG 1612 Query 26134 NNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTG 26193 | ||||||||| | |||||| |||| ||||| |||| ||| Sbjct 1611 CTCCCTGTGGAGCTGATCGGCATGAACTCGGGGCTCATGTGCCAGTACATCGAGTTCGTG 1552 Query 26194 GCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACA--GTACGCCTAACCCGT 26251 ||||||| |||||||| | |||||| | | | |||||| ||| ||||||| Sbjct 1551 GCCGACCGTCTGCTGTACTCGCTGGGTGTGTCGAAGATCTACAACGTA--AAGAACCCGT 1494 Query 26252 TCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCG 26311 |||||| ||||| | || ||| || | || ||||| ||||| || || ||| | || | Sbjct 1493 TCGACTGGATGGACATGATCTCGCTGCAGGGCAAGACGAACTTTTTCGAGAAGCGCGTGG 1434 Query 26312 GCGACTA 26318 |||| || Sbjct 1433 GCGAGTA 1427 >seq92 Length=63871 Score = 174 bits (192), Expect = 3e-38 Identities = 378/559 (68%), Gaps = 10/559 (2%) Strand=Plus/Plus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| ||||||||||||| || | ||| |||||| ||||| ||| | || |||| Sbjct 49004 TGGCAGATGTACAAGAAAGCGGAGGCCTCGTTCTGGACGGCCGAGGAGCTGGACCTGGTG 49063 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTG 25599 | ||| || | | |||| || | | |||||| | || ||||| ||||| Sbjct 49064 CACGACCTGAAGGACTGGGCGAACCTGACGGACAACGAGCGGTTCTTCATCAAGCACGTG 49123 Query 25600 TTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACC 25659 |||| ||||| || ||| || || || ||||||||||| ||| | || |||| | Sbjct 49124 CTGGCCTTCTTCGCTGCCAGCGACGGCATCGTGAACGAGAACCTGGCCATGAACTTCAGC 49183 Query 25660 AGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAAT 25719 | ||||||||| ||||||| || ||||||||||||||||| |||||||| || Sbjct 49184 AATGAAGTGCAGGTGCCGGAGGCCCGCTGCTTCTACGGTTTCCAGATCGCCATCGAGAAC 49243 Query 25720 GTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGTCGCCGAG 25776 | ||||| ||||||||| | ||| || || |||||||| | || | | ||| Sbjct 49244 ATCCACTCAGAGGTGTATTC---GCTGCTCATTGACACGTACATCAAGGATGCGACGGAG 49300 Query 25777 AGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGG 25836 | || | ||| | |||||||||| || || | | |||| ||| |||| ||| Sbjct 49301 AAGGACCACCTGCTGCGTGCCATCGATACGATCCCGTGTGTGAAGAAGAAAGCGCACTGG 49360 Query 25837 GCCATGAAGTGGATC-AACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGC 25895 || | |||||| | | | || || | | ||| ||||| || | | || || Sbjct 49361 GCGCTCAAGTGGTGCGACCCGCGAGTG-TCGTCGTACCCGGAGCGCGTGCTGACGTTCGC 49419 Query 25896 TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAGA 25954 | |||||||||||||| ||| || ||||| ||| | ||||||||||||||| || Sbjct 49420 AACCGTGGAGGGCATCTTCTTCTCGGGCTCGTTCTGC-TCGATCTTCTGGCTCAAGAAGC 49478 Query 25955 AGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCC 26014 || || ||| || ||| ||| || |||||||| |||||| | |||||||| | | Sbjct 49479 GCGGCCTCACGCCTGGCCTGAGCTTCTCGAACGAGCTGATCAGCCGTGACGAGGGCATGC 49538 Query 26015 ACAGAGATTTTGCCTGCCT 26033 ||| || || || |||| Sbjct 49539 ACACGGACTTCGCGAGCCT 49557 >seq1232 Length=16645 Score = 127 bits (140), Expect = 4e-24 Identities = 803/1281 (63%), Gaps = 59/1281 (5%) Strand=Plus/Plus Query 221419 CAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCT-----CG 221473 || ||| ||| |||||||||||| ||||| |||||||||| | ||||| | Sbjct 962 CATGGCGGCGAAGTAGATGGTCTCGAAGATGTTCTTGTTGAGCTCCCGGGCCTTCTCGCT 1021 Query 221474 GGAGAA-GTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGAT 221532 ||| | | || ||| || || ||| |||| || || ||||| || || || Sbjct 1022 CTCGAACGCGTAGTTCATG---AGGAT---AAACGCGTCCGCGAGGCCCTGGACGCCAAT 1075 Query 221533 ACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGAC 221592 ||||||||| | ||| | | ||||||| | ||| || |||||| || ||||||| Sbjct 1076 ACCGATGGGGCGGTGACGCATGTTGGACTTGCGCGCCTCGATCACGGGGTAGTAGTTGAC 1135 Query 221593 GTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTG 221652 |||||| | ||||| | ||| | |||| || || ||| || || |||||||| Sbjct 1136 GTCGATGACCTTGTTTAAGTTGCGGGTGACCACCTTCGTCACTTCATACAACTTCTGGTA 1195 Query 221653 ATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGG----GCAA 221708 ||||| ||||| | || | |||| || ||||| || | Sbjct 1196 GTTGAA----AACTC-----CTTCCT---------CCACGAAC----TTAGGCAGCGCCA 1233 Query 221709 CGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTAC 221768 | |||| ||| ||||| |||||||||||| || |||| || | ||| | Sbjct 1234 CAGACGCCAAGTTGCACACAGCCACCTCGTCCGGCGACGTGTACTCCATCACCTCACAGC 1293 Query 221769 AGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGT 221828 | | ||||||| | ||| || || |||| || || || |||||||| ||||| |||| Sbjct 1294 ATAAGTTGCTGGAGCGGATCGTGCCGAGGTTCTTCTGGTTCGACTTGCGGTTGGCCGCGT 1353 Query 221829 CCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGA 221888 ||||||| | ||||||||| | || ||||| | ||| || ||| || | ||| | Sbjct 1354 CCTTGTACAACATAAAGGGCACTCCCGTCTCAATCTGGGCGTCCAATATGGCGAACCACA 1413 Query 221889 GTTCTCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGA 221948 | | |||| | | |||| | | | ||||| ||| || ||| ||||| Sbjct 1414 GCTGCTGGGCGTTGATCGTCTTGCGGGCGCGTCCCTCCGTC---TCGTACTTTTCATAGA 1470 Query 221949 GCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCA 222008 | || || | || || | ||| | || || || | | || || | Sbjct 1471 GGGCCTCGAATTCGTCGCCCCAGCACTCATAGAGTCCAGGGGCCTCGTTAGGGCAATAGA 1530 Query 222009 GACTCCAGTGCTTG---TTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCG 222065 ||||||| |||| ||| ||| ||||||| |||||| || || || | ||| || | Sbjct 1531 GACTCCA---CTTGCCATTGGCTTCCACCCTCTTCATGAACAGATCAGGCACCCAAAGGG 1587 Query 222066 CCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAA 222125 | | || || || | | || ||| ||| ||||| ||| || | || ||||| | Sbjct 1588 CGTAGAACAGGTCGCGAGCGCGGTGCAACTCGTTGCCGTGGTTCTTACGGAGGTCCAAGA 1647 Query 222126 ACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGT 222185 |||| || | || |||||||| ||||||| ||||| ||| | | ||| |||||| Sbjct 1648 ACTCGAACACATCTGCGTGCCAAGGCTCCAAATAGATGGCGAAGGAGCCCTTACGCTTGC 1707 Query 222186 TGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTC 222245 || ||||| ||||| || | | |||| || | || || | || | | | Sbjct 1708 CTCCGCCCTGGTCCACGTACCGCGCGGTGTCGTTAAACACCCGCAGCATGGGGATGATGC 1767 Query 222246 CGTTGGATCGA-CCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCA 222304 | ||||| ||| ||||| ||||| ||||| | ||| | | ||| ||| Sbjct 1768 CATTGGA-CGAGCCGTTCGTGCCTCGGATGTAGCTGTTGGTGGCTCGGATGTT--GTGCA 1824 Query 222305 GAC--ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCA 222362 || ||||| ||||| ||||| ||| ||||| ||| || ||| | ||||| Sbjct 1825 TACTGATGCCAATACCTCCGGCCCATTTAGAGATACAGGCACATTGCTTTAACGTGTCGT 1884 Query 222363 TGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATT 222422 ||||| || || ||||| || | | | || || || |||||||||| || | Sbjct 1885 AAATGCCTTCAATTGAGTCGTCTTGCATGGCCAATAGGAAGCAAGACGACAGTTGTGGGC 1944 Query 222423 TGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCA 222482 | | | ||||||||| || || || |||| || || || | ||||| | Sbjct 1945 GCGGCGTGCCGGCGTTAAAAAGTGTCGGGGTGGCATGCGTGAAAAACATTTGCGACATAA 2004 Query 222483 GATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCA 222542 | ||||||||||| | | | || |||||| | ||| || | || | || Sbjct 2005 GCTCGTACGTCTCCAGGGCGGCCGCAATGTTGCTCTTGTGGATGCCAAGTGCCACGCGCA 2064 Query 222543 TGTACATGTACTGGGGCCTCTCCACAGGACCCTTGGAGCT---GGAGAGCAGGTACGATT 222599 | ||| | ||| || | |||||| | ||| | | | || |||||| Sbjct 2065 TAATCATTTGCTGCGGACGCTCCAC---CACTTTGCCGTTTACGCGGAAGAGGTACCCGC 2121 Query 222600 TTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGG 222659 || ||||| || ||||||||||||| | |||||||| | | |||| | | ||| | Sbjct 2122 GCTCGAGAGTTTTAAACCCAAAGTAGTCGTAATCAAAGTCCCGGTCGTGGATGATGGCCG 2181 Query 222660 CGTCCAGCTCCGACTTGTGCT 222680 || |||||| |||||||| Sbjct 2182 AGTTCAGCTCGTCCTTGTGCT 2202 Score = 105 bits (116), Expect = 1e-17 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 221095 CAGCACCTTGACCATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTG 221154 |||| |||| | || || |||||| || | ||| ||||| | ||||| | | | Sbjct 644 CAGCTCCTTCATCAGGTACTTGTTGACGATCGTGAACTCTCCAGCCAGCACTCGGCGGTT 703 Query 221155 GTACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCT 221214 ||||| ||| || ||| |||| ||||| ||||||||| || |||||||| |||||| Sbjct 704 GTACATGTTGGACGTGTACGGCTCGATAGACTCGTTGTTTCCAAGGATCTGGGCCGTGGA 763 Query 221215 GGCGGTGGGCATGGGTGCCACCAGCAGACTGTTGCGCAGTCCG 221257 || || |||||||| ||||||||||| |||||| |||||| Sbjct 764 AGCCGTCGGCATGGGGGCCACCAGCAGCGAGTTGCGGAGTCCG 806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928745599375360