Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq6666 118 1e-21 seq92 100 3e-16 seq347 95.1 1e-14 >seq6666 Length=2405 Score = 118 bits (130), Expect = 1e-21 Identities = 379/576 (66%), Gaps = 14/576 (2%) Strand=Plus/Minus Query 64948 ATTGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACT 65007 ||||||| ||||| ||||||| | || ||| | || | | |||||| | || Sbjct 1995 ATTGACACGTACATCAAGGATGCGACGGAGAAGGACCACCTGCTGCGTGCCATCGATACG 1936 Query 65008 GTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAA-AGTCTCG 65066 | || ||| | ||||||| ||| | ||||| | || |||| ||| | ||| ||| Sbjct 1935 ATCCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGAGTGTCG 1876 Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126 || | | | ||||| || | ||||| || ||||||||| ||||||||||| || || Sbjct 1875 -TCGTACCCGGAGCGTCTGCTGGCGTTCGCAGCTGTGGAGGGCATCTTCTTCTCGGGCTC 1817 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 |||||| | || | ||| | |||||||| || |||||||| ||||| ||||||| || Sbjct 1816 GTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTGAGCTTCTCGAA 1757 Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGAC 65246 || || || ||| || ||||| | ||| ||| || | |||| ||| | | | Sbjct 1756 CGAGCTGATCAGCCGTGACGAGGGCATGCACACGGACTTCG-CGTG--CCTCATGTACTC 1700 Query 65247 TTTGCGTAATAGACCCACTACCGAA----ACTATCCACGCCATCGTGAAAGAGGCGGTTG 65302 || | | || || ||| | | |||| |||||| || ||||| Sbjct 1699 CAAGC-TGGTGAACAAGCTGCCGGAGAGCCGCGTGCACGAGATCGTGCGCGACGCGGTGA 1641 Query 65303 AGATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGT-AATCTCATCGGTATGAACTCT 65361 ||| ||| | | |||| | ||| | ||||| ||| | || ||||| |||||||| Sbjct 1640 CGATCGAGCACGAGTTCGTGCGTGACTCGCTCCC-TGTGGAGCTGATCGGCATGAACTCG 1582 Query 65362 GAGAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGG-GT 65420 | | |||| | ||||||| |||| ||| | || ||||| || || | |||| || Sbjct 1581 GGGCTCATGTGCCAGTACATCGAGTTCGTGGCCGACCGTCTGCT-GTACTCGCTGGGTGT 1523 Query 65421 GCCACCCATTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGG 65480 | | || | |||| ||||| || || |||| ||||| | || || | || Sbjct 1522 GTCGAAGATCTACAACGTAAAGAACCCGTTCGACTGGATGGACATGATCTCGCTGCAGGG 1463 Query 65481 GAAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 ||||| ||||| || |||||||| || || || || Sbjct 1462 CAAGACGAACTTTTTCGAGAAGCGCGTGGGCGAGTA 1427 >seq92 Length=63871 Score = 100 bits (110), Expect = 3e-16 Identities = 193/282 (68%), Gaps = 2/282 (1%) Strand=Plus/Plus Query 64948 ATTGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACT 65007 ||||||| ||||| ||||||| | || ||| | || | | |||||| | || Sbjct 49271 ATTGACACGTACATCAAGGATGCGACGGAGAAGGACCACCTGCTGCGTGCCATCGATACG 49330 Query 65008 GTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAA-AGTCTCG 65066 | || ||| | ||||||| ||| | ||||| | || |||| ||| | ||| ||| Sbjct 49331 ATCCCGTGTGTGAAGAAGAAAGCGCACTGGGCGCTCAAGTGGTGCGACCCGCGAGTGTCG 49390 Query 65067 CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTC 65126 || | | | |||||| | | |||| || |||||||| ||||||||||| || || Sbjct 49391 -TCGTACCCGGAGCGCGTGCTGACGTTCGCAACCGTGGAGGGCATCTTCTTCTCGGGCTC 49449 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 |||||| | || | ||| | |||||||| || |||| ||| ||||| ||||||| || Sbjct 49450 GTTCTGCTCGATCTTCTGGCTCAAGAAGCGCGGCCTCACGCCTGGCCTGAGCTTCTCGAA 49509 Query 65187 TGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 || || || ||| || ||||| | ||| ||| || || Sbjct 49510 CGAGCTGATCAGCCGTGACGAGGGCATGCACACGGACTTCGC 49551 >seq347 Length=38231 Score = 95.1 bits (104), Expect = 1e-14 Identities = 241/358 (67%), Gaps = 8/358 (2%) Strand=Plus/Minus Query 14430 TGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACCACCATGGTGAAG 14489 |||||||||||||| |||| | ||||| | || | || |||||||| || || || | Sbjct 27616 TGAAGGTGGCACAATTGGCTGGTTATGTGTCAGAGCACTCCGCGTACCATCACGGCGA-G 27558 Query 14490 TATCCTTAGC-GGACACGATTGTTAAGTTGGCAAACGACTACACGGGTTCAAACAACATT 14548 | || || || | || || || |||| | |||| || |||||||| Sbjct 27557 CAGAGTTTGCAGGGCTGTATCGTCAACATGGCTCAGGACTTTGTCGGAAGCAACAACATC 27498 Query 14549 AACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTAAGGATGCTTCT 14608 |||| || || ||||| || ||||||||| | ||||| || |||||||| | Sbjct 27497 CACCTCCTGTCGCCAATCGGTCAGTTCGGTACGCGTTTGATGGGCGGCAAGGATGCAGC- 27439 Query 14609 CAGA-CGAGGTACATTTTCACAAAACTT--ACCAAGGAGGCTCGCAAGATCTTTGATCCT 14665 ||| | | || |||||||| || ||| | ||| ||||| ||||| ||||||| Sbjct 27438 CAGCGCTCGTTATATTTTCACGAA-CTTGGAACAACTCA-CTCGCCGGATCTATGATCCT 27381 Query 14666 CGGGATGACCCGATCCTCAACTACTTGGACGATGATGGACGCTCCATTGAACCAGACTTT 14725 | || | | ||| | ||||||||||| || || | || ||||| || || | Sbjct 27380 CTTGACAATGATGTGCTCGAATACTTGGACGAAGACGGTCAATCAATTGAGCCGGAATGG 27321 Query 14726 TACATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAGGGTATCGGTACGGGTT 14783 || || || | | | |||||||| || || || || | ||| |||||||| ||||||| Sbjct 27320 TATATCCCGATTATCCCAATGGTACTTGTCAACGGCAGCGACGGTATCGGAACGGGTT 27263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596505886366720