Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq898 125 2e-23 seq1005 96.9 1e-14 seq326 95.1 4e-14 seq1361 84.2 6e-11 >seq898 Length=21670 Score = 125 bits (138), Expect = 2e-23 Identities = 183/255 (72%), Gaps = 8/255 (3%) Strand=Plus/Minus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 ||||||||||| |||||||| | || || ||||| |||||||| ||||| ||||| Sbjct 14039 CGACGCTGAATGTAACCAGTCTCGGCCGTCTTCACAGCCGTATCAATCAGACCTTCACGA 13980 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCA 302712 |||||||| || ||||| || | |||| ||| | ||| | | || |||| Sbjct 13979 CCACCCATGGCGTGGAAAAAGAATTCTTGAGGTGTCAAACCCTTCAGGTACGAATTCTCC 13920 Query 302713 ACGAAACCACGCGCCTCGGG--CGAATCGTCGAACTTG--GTAAAGTGTGGCAGGGTCCT 302768 ||||||||||| || || | || ||| |||| |||| || ||||| || | Sbjct 13919 ACGAAACCACGACTTTCCGGACCCAA--GTCATCCTTGCCGTAA--TGCGGCAGCGTACG 13864 Query 302769 GTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAAT 302828 || | | | ||||| |||||||||||||| || ||||||||||| |||| || | ||| Sbjct 13863 GTGGTTAAAACCGTACGGGATACGCTTTCCTTCCACGTTCTGCTGGCCCACACAAGCAAT 13804 Query 302829 CATCTGCGAAATATT 302843 |||||||| ||||| Sbjct 13803 AATCTGCGAGATATT 13789 >seq1005 Length=19703 Score = 96.9 bits (106), Expect = 1e-14 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 251488 CCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCC 251547 ||||| || | || |||||| |||||||| || || | ||| || ||||| |||||||| Sbjct 16079 CCGTGCGAGACCAGACAATCGCGCTCCATCTCTCCCATACGCAGGCCACCTTCGCGAGCA 16138 Query 251548 CTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGC 251607 | |||||| ||||| || || || | || ||||| ||||| || | Sbjct 16139 CGACCCTCCATGGGCTGGCGCGTCAGCATGGTCACGGGACCACGCGAGCGCGAGTGGATC 16198 Query 251608 TTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 || || | ||||||||||| || ||||||||||| | ||| ||||||||||| Sbjct 16199 TTGTCGTCGACCATATGCTTCAGGCGCTGGTAGAACGTGGGTCCGATGAAGAT 16251 >seq326 Length=38572 Score = 95.1 bits (104), Expect = 4e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 354003 CTTAATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTC 354062 ||| || || | || || |||||||||||||| ||||| ||| | || || || || || Sbjct 26379 CTTGATGGCCGAAGCAAGGGCACCAAGCGAGTCGCGGTCAAGGTAGTTCGTCGGCTCATC 26320 Query 354063 AAGGATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTG 354122 ||| | ||| | |||||| | || |||||| || ||||| || || ||||| |||||||| Sbjct 26319 AAGCACAAGGATGTGCGGGTTCAGCCACATAGCGGCAGCGAGCACGACCTTCACCTTCTG 26260 Query 354123 TCCGCCTGATAG 354134 || || || || Sbjct 26259 ACCACCGGACAG 26248 >seq1361 Length=15637 Score = 84.2 bits (92), Expect = 6e-11 Identities = 68/80 (85%), Gaps = 2/80 (3%) Strand=Plus/Minus Query 410494 TGACGCAATGGATAGCGTGCCAGACTTCTAATCTGGAAGTTGCGGGTTCGAGTCCCGTCG 410553 || ||||||||||||||| |||||||| ||||||| ||||||||||||||||||| || Sbjct 12843 TGGCGCAATGGATAGCGTATCAGACTTCGAATCTGGGGGTTGCGGGTTCGAGTCCCG-CG 12785 Query 410554 T-GGGTAAtttttttAATTT 410572 | | ||| |||| || |||| Sbjct 12784 TCGCGTACTTTTATTCATTT 12765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471656480127328