Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1232 136 4e-27 seq132 114 1e-20 seq570 104 2e-17 seq884 86.0 6e-12 >seq1232 Length=16645 Score = 136 bits (150), Expect = 4e-27 Identities = 365/551 (66%), Gaps = 29/551 (5%) Strand=Plus/Plus Query 138474 CTTGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCG 138533 || ||||| || || ||||| || |||| | || | || || || |||| ||||| Sbjct 638 CTCGATCAGCTCCTTCATCAGGTACTTGTTGACGATCGTGAACTCTCCAGCCAGCACTCG 697 Query 138534 ACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGC 138593 || ||| |||||| ||| | ||||| | || ||||||||||| || ||||| || Sbjct 698 GCGGTTGTACATGTTGGACGTGTACGGCTCGATAGACTCGTTGTTTCCAAGGATCTGGGC 757 Query 138594 CGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGAT 138653 ||||| || ||||||||| ||||||| || || || || | |||| ||||||| Sbjct 758 CGTGGAAGCCGTCGGCATGGGGGCCACCAGCAGCGAGTTGCGGAGTCCGT---GCTTGAT 814 Query 138654 -TCGT--TCCTTGAGCGACGACCAGTCCCACAAATC--GCTA-GGTTTTTTGTTCCACAT 138707 ||| |||||||||| | ||||| ||||| | | | | || | | |||||| Sbjct 815 CACGTCCTCCTTGAGCGTAGCCCAGTTCCACATACCCGACGACGGGGTGACGCCCCACAT 874 Query 138708 ATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAA 138767 ||| |||| || || ||| || ||||| ||| | | ||| ||||| || | Sbjct 875 GTCGAACTGGAAGATGCCCTTGCTAGCGGGCGAGCCCTGGAACGTCTCGTACGGGCCGAG 934 Query 138768 CTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTG 138827 || | || | ||| | || ||| | || | |||| || || ||| || | Sbjct 935 TTCCTTGGCGATCTCCATCGACGTCTCCATGGCGGCGAAGTAGATGGTCTCGAAGATGTT 994 Query 138828 CTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACG------GCATGCGGAGCATCGTGAA 138881 || |||||| ||||||| |||||||| ||| |||| ||| | || Sbjct 995 CTTGTTGAGCTCCCGGGCCTTCTCGCTCTCGAACGCGTAGTTCATGAGGA------TAAA 1048 Query 138882 CGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTT 138941 |||||| || || || || ||||| | |||| ||||| || |||| || ||| | Sbjct 1049 CGCGTCCGCGAGGCCCTGGACGCCAATACCGATGGGGCGGTGACGCATGTTGGAC----T 1104 Query 138942 TGCG-GCTTCGAT---AGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGA 138997 |||| || ||||| || || ||||| || ||||||| |||||||| || || || Sbjct 1105 TGCGCGCCTCGATCACGGGGTAGTAGTTGACGTCGATGACCTTGTTTAAGTTGCGGGTGA 1164 Query 138998 CCACCTTAGTC 139008 ||||||| ||| Sbjct 1165 CCACCTTCGTC 1175 >seq132 Length=78195 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| || || || || || ||||| || || || | | Sbjct 54559 ATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 54618 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || |||||||| ||||| || || || || || || || Sbjct 54619 GACTCGATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 54678 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| || || || ||||| ||||| | | || || || ||| Sbjct 54679 CAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAAC 54738 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| ||||| || ||| ||||| |||| ||||||| ||| Sbjct 54739 ATTCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGCGGTGGC 54786 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| || || || || || ||||| || || || | | Sbjct 54787 ATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 54846 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || |||||||| ||||| || || || || || || || Sbjct 54847 GACTCGATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 54906 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| || || || ||||| ||||| | | || || || ||| Sbjct 54907 CAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAAC 54966 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| ||||| || ||| ||||| |||| ||||||| ||| Sbjct 54967 ATTCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGCGGTGGC 55014 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || || ||||| || || || | | Sbjct 54331 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 54390 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || |||||||| ||||| || || || || || || || Sbjct 54391 GACTCGATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 54450 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| || || || ||||| ||||| | | || || || ||| Sbjct 54451 CAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAAC 54510 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| ||||| || ||| ||||| |||| ||||||| ||| Sbjct 54511 ATTCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGCGGTGGC 54558 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| || || || || || ||||| || || || | | Sbjct 55015 ATGCAGATCTTTGTGAAGACGCTGACGGGCAAGACGATCACGCTGGACGTGGAGCCGTCG 55074 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || |||||||| ||||| || || || || || || || Sbjct 55075 GACTCGATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 55134 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| || || || ||||| ||||| | | || || || ||| Sbjct 55135 CAGCGTCTGATCTTCGCTGGCAAGCAGCTTGAGGACGGTCGCACGCTGAGCGACTACAAC 55194 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| ||||| ||||| || ||| ||||| |||| Sbjct 55195 ATTCAGAAGGAGTCGACGCTGCACCTGGTGCTGCG 55229 >seq570 Length=29657 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || || |||||||| || || | | Sbjct 28825 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 28884 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || ||||| || ||||| || || || || ||||| || Sbjct 28885 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAG 28944 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| ||||| || ||||||||||| | | || || || ||| Sbjct 28945 CAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAAC 29004 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || ||| ||||| |||| |||| || || Sbjct 29005 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGCGG 29051 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || || |||||||| || || | | Sbjct 29053 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 29112 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || ||||| || ||||| || || || || ||||| || Sbjct 29113 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAG 29172 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| ||||| || ||||||||||| | | || || || ||| Sbjct 29173 CAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAAC 29232 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || ||| ||||| |||| |||| || || Sbjct 29233 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGCGG 29279 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || || |||||||| || || | | Sbjct 29281 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATCACGCTCGACGTGGAGCCGTCG 29340 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | || | || || || ||||| || ||||| || || || || ||||| || Sbjct 29341 GACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAG 29400 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| ||||| || ||||||||||| | | || || || ||| Sbjct 29401 CAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTACAAC 29460 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || ||| ||||| |||| |||| || || Sbjct 29461 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGTGG 29507 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||| || | || ||||| || || || || || || ||||| || || | Sbjct 28594 ACAATGCAGATTTTCGTCAAGACGCTGACGGGCAAGACCATCACACTCGACGTGGAGCCG 28653 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||| | | || | || || || ||||| || ||||| || || || || ||||| Sbjct 28654 TCGGACTCGATCGACAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCGCCCGAC 28713 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || || | ||||| ||||| || ||||||||||| | | || || || Sbjct 28714 CAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGTCGCACGCTGAGCGACTAC 28773 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || ||||| ||||| || ||| ||||| |||| |||| || || Sbjct 28774 AACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTGCGTCTGCGTGGCGG 28823 >seq884 Length=21595 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || ||||| || || || | || Sbjct 4983 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACGCTGGACGTGGAGCCGTCC 4924 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||| | || | || || || || ||||| ||||| || || || || || || || Sbjct 4923 GACAGCATTGACAATGTCAAGCAGAAAATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 4864 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || ||| ||||||| ||||| || ||||| ||||| Sbjct 4863 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGA 4829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449849550936320