Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1232 96.9 3e-15 seq570 95.1 1e-14 seq132 89.7 5e-13 >seq1232 Length=16645 Score = 96.9 bits (106), Expect = 3e-15 Identities = 404/626 (65%), Gaps = 15/626 (2%) Strand=Plus/Plus Query 147792 CATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCG--CGCTTTGCAATCCTCG 147849 ||| |||||||| |||||||| || ||||| | || ||||| ||| ||||| |||| Sbjct 1562 CATGAACAGATCAGGCACCCAAAGGGCGTAGAACAGGTCGCGAGCGCGGTGCAA--CTCG 1619 Query 147850 GCGCCCATGTTGCGTTTCAAATT--AAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAA 147907 ||| ||| | | | | ||| || | | | | || |||||||| || || | Sbjct 1620 TTGCCGTGGTT-CTTACGGAGGTCCAAGAACTCGA-ACACATCTGCGTGCCAAGGCTCCA 1677 Query 147908 TGTAGACGGCCAGCGCACCTTTACGCTT---TCCGCCCTGGTCGACATGGCGCACCATGT 147964 |||| ||| | | || |||||||| |||||||||||| || | ||| | ||| Sbjct 1678 AATAGATGGCGAAGGAGCCCTTACGCTTGCCTCCGCCCTGGTCCACGTACCGCGCGGTGT 1737 Query 147965 TGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCT 148024 ||||||||| |||| |||||| | ||| | | | |||||| ||| ||| | Sbjct 1738 CGTTAAACACCCGCAGCATGGGGATGATGCCATTGGACGAGCCGTTCGTGCCTCGGATGT 1797 Query 148025 TGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATA 148084 |||| | |||||| | | ||||| | | |||||| || ||| | | || || | Sbjct 1798 AGCTGTTGGTGGCTCGGATGTTGTGCATACTGATGCCAATACCTCCGGCCCATTTAGAGA 1857 Query 148085 TGGCAGCGCA-ATCGC-CCAATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCC 148142 | ||| ||| || || || || ||| ||||| || || ||||| || | | | Sbjct 1858 T-ACAG-GCACATTGCTTTAACGTGTCGTAAATGCCTTCAATTGAGTCGTCTTGCATGGC 1915 Query 148143 AAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACT 148202 | | || || || ||| ||| || | |||| || || ||||| || || | Sbjct 1916 CAATAGGAAGCAAGACGACAGTTGTGGGCGCGGCGTGCCGGCGTTAAAAAGTGTCGGGGT 1975 Query 148203 CGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTC 148262 || ||||| || || |||| ||| | |||||||| | ||| | | |||| Sbjct 1976 GGCATGCGTGAAAAACATTTGCGACATAAGCTCGTACGTCTCCAGGGCGGCCGCAATGTT 2035 Query 148263 GTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTG 148322 | ||| ||||| || || |||||||| | ||| ||||| || || || | |||| Sbjct 2036 GCTCTTGTGGATGCCAAGTGCCACGCGCATAATCATTTGCTGCGGACGCTCCACCACTTT 2095 Query 148323 ATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATC 148382 ||| | || || || || ||||| ||||| | |||||||| | |||||| Sbjct 2096 GCCGTTTACGCGGAAGAGGTACCCGCGCTCGAGAGTTTTAAACCCAAAGTAGTCGTAATC 2155 Query 148383 AAAATCTAGCTCGTAAGCGATGGCCG 148408 ||| || | |||| |||||||| Sbjct 2156 AAAGTCCCGGTCGTGGATGATGGCCG 2181 >seq570 Length=29657 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||| || | | ||||| || || |||||||||||||||| || Sbjct 28818 ACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 28759 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || ||||| || |||| |||| || ||||| || || || || ||||| Sbjct 28758 GCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCC 28699 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || ||| || || |||| | || | | || | ||||||||| |||| Sbjct 28698 CTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAG 28639 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || ||||| || || | |||||||||||| Sbjct 28638 TGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAAATCTGCAT 28597 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||| || | | ||||| || || |||||||||||||||| || Sbjct 29046 ACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 28987 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || ||||| || |||| |||| || ||||| || || || || ||||| Sbjct 28986 GCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCC 28927 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || ||| || || |||| | || | | || | ||||||||| |||| Sbjct 28926 CTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAG 28867 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | || || || ||||| || || | ||| |||||||| Sbjct 28866 CGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 28825 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||| || | | ||||| || || |||||||||||||||| || Sbjct 29274 ACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 29215 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || ||||| || |||| |||| || ||||| || || || || ||||| Sbjct 29214 GCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCC 29155 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || ||| || || |||| | || | | || | ||||||||| |||| Sbjct 29154 CTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAG 29095 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | || || || ||||| || || | ||| |||||||| Sbjct 29094 CGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 29053 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||| || | | ||||| || || |||||||||||||||| || Sbjct 29502 ACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAGCGT 29443 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || ||||| || |||| |||| || ||||| || || || || ||||| Sbjct 29442 GCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCC 29383 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || ||| || || |||| | || | | || | ||||||||| |||| Sbjct 29382 CTCCTTGTCCTGAATCTTCTGCTTCACGTTGTCGATCGAGTCCGACGGCTCCACGTCGAG 29323 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | || || || ||||| || || | ||| |||||||| Sbjct 29322 CGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 29281 >seq132 Length=78195 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/199 (70%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || ||||||||||||||||||| || || || || ||||| || || | Sbjct 54524 GACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCG 54465 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || || || || ||||| || || || || || || || | Sbjct 54464 AAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGACG 54405 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | || | ||||||||| || | ||| | ||| || || ||||| || || Sbjct 54404 TTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTC 54345 Query 132110 ATGAAAATCTGCATGACTT 132128 | ||| |||||||| |||| Sbjct 54344 ACGAAGATCTGCAT-ACTT 54327 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||||| |||| || | | ||||| || ||||||||||||||||||| || Sbjct 55236 ACGAAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGCGT 55177 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || ||||| || || | |||| |||||||| || || || || ||||| Sbjct 55176 GCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGGATGCC 55117 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || || | | || | | || | ||||||||| || | Sbjct 55116 CTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATCGAGTCCGACGGCTCCACGTCCAG 55057 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||| | ||| || || ||||| || || | || ||||||||| Sbjct 55056 CGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCATG 55014 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || ||||||||||||||||||| || || || || ||||| || || | Sbjct 54752 GACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCG 54693 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || || || || ||||| || || || || || || || | Sbjct 54692 AAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGACG 54633 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | || | ||||||||| || | ||| | ||| || || ||||| || || Sbjct 54632 TTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTC 54573 Query 132110 ATGAAAATCTGCATG 132124 | || ||||||||| Sbjct 54572 ACAAAGATCTGCATG 54558 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || ||||||||||||||||||| || || || || ||||| || || | Sbjct 54980 GACTCCTTCTGAATGTTGTAGTCGCTCAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCG 54921 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || || || || ||||| || || || || || || || | Sbjct 54920 AAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGACG 54861 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | || | ||||||||| || | ||| | ||| || || ||||| || || Sbjct 54860 TTGTCGATCGAGTCCGACGGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTC 54801 Query 132110 ATGAAAATCTGCATG 132124 | || ||||||||| Sbjct 54800 ACAAAGATCTGCATG 54786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476560297923840