Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq164 246 4e-60 >seq164 Length=50448 Score = 246 bits (272), Expect = 4e-60 Identities = 454/652 (70%), Gaps = 13/652 (2%) Strand=Plus/Plus Query 146920 AGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCC 146979 || ||||| || ||||| || || ||||| || || || | ||| ||||| || || Sbjct 4618 AGCGGCTCGACATGGTTAAGATACACGTGGGCATCACCAATAACGTGGACAAACTCGCCA 4677 Query 146980 GGCTTAAGGCCGGTCACGTGGGCCACCATGTAG-GTGAGCAGCGAGTAGCTGGCTATGTT 147038 ||||| || || |||| || || | || || | || |||| || ||||||||| ||||| Sbjct 4678 GGCTTCAGTCCACTCACCTGTGCTATCA-GTCGCGTAAGCAACGCGTAGCTGGCGATGTT 4736 Query 147039 GAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCC 147098 ||| || || || || |||||||| |||| | |||||||| |||||| || | ||| || Sbjct 4737 GAACGGCACGCCAAGTCCCATGTCGGCCGAGCGCTGGTACATCTGGCAGGACAACTCGCC 4796 Query 147099 GTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTC 147158 |||||||||||| |||||||| | ||||| |||||||| |||||||| | || || Sbjct 4797 GTCGGCCACGTAGAACTGGCAGAACATGTGACACGGCGGGAGCGCCATCTCATTGAGATC 4856 Query 147159 CGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTG-CTCTCGGGGTTCCTCTTAATCTCTT 147217 ||| || ||||| ||||| | ||| | ||| | | | || || || | | || | Sbjct 4857 CGCCGGATTCCACGCCGACAGCACGATCCGACGGTCGGTC-GGATTTGTGCGCAGCTTGT 4915 Query 147218 CGATAACC-CACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCA-GTCCAC 147275 | || ||| || | ||||||||||||||||| || |||| | | | ||| |||| Sbjct 4916 CAATCACCTCAGC-GAGCTGGTCCACGCCCTGACCAGTGTAG-TCGGCGTGCATGTCCGT 4973 Query 147276 GTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTT 147335 |||| | || ||||| || | ||||||||||||||| || || || |||||||| ||| Sbjct 4974 GTACTTTGCTCCAAAATGACGCCACTGGAAGCCGTAGACCGGTCCGAGGTCGCC-AACTT 5032 Query 147336 TCTGTGCGAGAAGCCCGC-CCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGC 147394 | | | | || || | | | ||| |||| | || || | | ||||||||||| Sbjct 5033 CCCGCGACTGCAGTCCTCGACTGTCCAGATACTCCCGCGATCCATTGCCGTCCCAGATGT 5092 Query 147395 CCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCT 147454 | |||| | ||| | | |||| ||| | ||||||||| ||||||| Sbjct 5093 GGATATCCTTCTCCTGCAGCGTGTGCGCACTCGTGTCGCCACTGATGAACCACAGCAGCT 5152 Query 147455 CCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAAC---TGGTCCC 147511 ||||| || || | ||| ||||| | |||||| || |||| ||||||| | | ||| Sbjct 5153 CCTCCGCCACGCCGCGCCAGAAGACGCGCTTGGTCGTGAGCAAGGGGAACACGTTGCCCC 5212 Query 147512 TCAGCGAATACCTCGCCTGGTCCCCAAACACAGACAGCGTGCCCGTGCCCGT 147563 |||| | | | ||| | || || || |||||||| || || ||||| Sbjct 5213 TCAGACTGAAGCGCATCTGCGCTCCGAAGACCGACAGCGTCCCTGTTCCCGT 5264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583425683481600