Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq132 149 6e-31 seq570 132 4e-26 seq884 116 3e-21 >seq132 Length=78195 Score = 149 bits (164), Expect = 6e-31 Identities = 177/236 (75%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 35503 TTTA-TTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGT 35561 |||| ||||||||||| | | || ||||| || | ||| |||||| |||||||||| Sbjct 55249 TTTAGTTTCCACCACGAAGGCGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGT 55190 Query 35562 AATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGT 35621 | ||| || || || |||| || |||||||| || || || |||| |||||||||| Sbjct 55189 AGTCGCTCAGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGT 55130 Query 35622 CCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTC 35680 | | || | || |||||||||| |||||| ||||| | |||| | | || ||| | Sbjct 55129 CAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGA-CGTTGTCGATCGAGTCCGAC 55071 Query 35681 GATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | ||||| |||| ||||||||| || ||||||| || |||||||| |||||||| Sbjct 55070 GGCTCCACGTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 55015 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | || ||||| || | ||| |||||| ||||||||||| ||| | Sbjct 54785 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 54726 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| || |||||||| || || || |||| ||||||||||| | || Sbjct 54725 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 54666 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | || |||||||||| |||||| ||||| | |||| | | || ||| || ||||| Sbjct 54665 ATGCCCTCCTTGTCCTGGATCTTCTGCTTGA-CGTTGTCGATCGAGTCCGACGGCTCCAC 54607 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||||||| || ||||||| || |||||||| |||||||| Sbjct 54606 GTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 54559 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | || ||||| || | ||| |||||| ||||||||||| ||| | Sbjct 55013 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 54954 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| || |||||||| || || || |||| ||||||||||| | || Sbjct 54953 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 54894 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | || |||||||||| |||||| ||||| | |||| | | || ||| || ||||| Sbjct 54893 ATGCCCTCCTTGTCCTGGATCTTCTGCTTGA-CGTTGTCGATCGAGTCCGACGGCTCCAC 54835 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||||||| || ||||||| || |||||||| |||||||| Sbjct 54834 GTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACAAAGATCTGCAT 54787 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | || ||||| || | ||| |||||| ||||||||||| ||| | Sbjct 54557 CCACCGCGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTC 54498 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| || |||||||| || || || |||| ||||||||||| | || Sbjct 54497 AGCGTGCGACCGTCCTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGCGGG 54438 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | || |||||||||| |||||| ||||| | |||| | | || ||| || ||||| Sbjct 54437 ATGCCCTCCTTGTCCTGGATCTTCTGCTTGA-CGTTGTCGATCGAGTCCGACGGCTCCAC 54379 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCT 35739 |||| ||||||||| || ||||||| || ||||| || |||||||| || Sbjct 54378 GTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATACT 54328 >seq570 Length=29657 Score = 132 bits (146), Expect = 4e-26 Identities = 175/239 (73%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 35502 CTTTA-TTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTG 35560 ||||| ||||||||||| | | || ||||| || | ||| |||||| || |||||| Sbjct 29516 CTTTAGTTTCCACCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTG 29457 Query 35561 TAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGG 35620 || ||| || || || |||| ||||||||||| || || || || | ||||||||| Sbjct 29456 TAGTCGCTCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGG 29397 Query 35621 TCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCT 35679 || | || | || |||||||||| ||||| ||||||| |||| | | || ||| Sbjct 29396 TCGGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGA 29338 Query 35680 CGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || ||||| || | |||||| || || ||||||| || || || || |||||||||| Sbjct 29337 CGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATTC 29279 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| ||||| | | || ||||| || | ||| |||||| || |||||||| ||| Sbjct 29053 TTCCGCCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGC 28994 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 || || || |||| ||||||||||| || || || || | ||||||||||| | | Sbjct 28993 TCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCG 28934 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCC 35686 | | || |||||||||| ||||| ||||||| |||| | | || ||| || ||| Sbjct 28933 GGATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCC 28875 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || || | |||||| || || ||||||| || || || || |||||||||| Sbjct 28874 ACGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATTC 28823 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| ||||| | | || ||||| || | ||| |||||| || |||||||| ||| Sbjct 29281 TTCCGCCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGC 29222 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 || || || |||| ||||||||||| || || || || | ||||||||||| | | Sbjct 29221 TCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCG 29162 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCC 35686 | | || |||||||||| ||||| ||||||| |||| | | || ||| || ||| Sbjct 29161 GGATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCC 29103 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || || | |||||| || || ||||||| || || || || |||||||||| Sbjct 29102 ACGTCGAGCGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATTC 29051 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| ||||| | | || ||||| || | ||| |||||| || |||||||| ||| Sbjct 28825 TTCCGCCACGCAGACGCAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGC 28766 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 || || || |||| ||||||||||| || || || || | ||||||||||| | | Sbjct 28765 TCAGCGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCG 28706 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCC 35686 | | || |||||||||| ||||| ||||||| |||| | | || ||| || ||| Sbjct 28705 GGATGCCCTCCTTGTCCTGAATCTTCTGCTTCA-CGTTGTCGATCGAGTCCGACGGCTCC 28647 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 || || | ||||| || || ||||||| || || || || ||||||||| Sbjct 28646 ACGTCGAGTGTGATGGTCTTGCCCGTCAGCGTCTTGACGAAAATCTGCATT 28596 >seq884 Length=21595 Score = 116 bits (128), Expect = 3e-21 Identities = 142/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| || |||||||| || | | || || |||| || |||||||| || || || | Sbjct 4794 CCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 4853 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 ||| ||||||||||| | || | || |||||||||| ||| || ||||| | | ||| Sbjct 4854 TCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATTTTCTGCTTGACA-TTG 4912 Query 35667 CCACCG-TGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 || | ||||| || ||||| |||| |||||| || || ||||||| || |||||| Sbjct 4913 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACA 4972 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 4973 AAGATCTGCAT 4983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450745455243520