Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20fragariae_20[genbank_20GCA_5F002025845.1_202017-03- 14] 8,544 sequences; 76,969,664 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq6666 111 2e-19 >seq6666 Length=2405 Score = 111 bits (122), Expect = 2e-19 Identities = 370/567 (65%), Gaps = 19/567 (3%) Strand=Plus/Plus Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668 |||| | ||| |||||||| || | |||||| || | || || | ||||| || | Sbjct 1704 ACATGAGGCACGCGAAGTCCGTGTGCATGCCCTCGTCACGGCTGATCAGCTCGTTCGAGA 1763 Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAA-GATCCA 39727 | | || |||||||| || || ||||| |||||||| || |||| |||| || || || Sbjct 1764 AGCTCAGGCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAACGAGCCC 1822 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA-------ACT 39780 || ||||||||||| || || ||||| || || | || | ||| ||| ||| Sbjct 1823 GAGAAGAAGATGCCCTCCACAGCTGCGAACGCCAGCAGACGCTCCGGGTACGACGACACT 1882 Query 39781 TGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGT 39840 | | | | |||||| | ||||| | ||||||||||| ||||| || || || Sbjct 1883 CG---CGGGTCGCA-CCACTTGAGCGCCCAGTGCGCTTTCTTCTTCACACACGGGATCGT 1938 Query 39841 TTCTATAGCATTAAAGAGATAAT-GTTTTTCATCACTATCTTTAACATATGTATCTATTA 39899 || || ||| | || | | || | | || | ||| || | || || || || | Sbjct 1939 ATCGATGGCACGCAGCAGGTGGTCCTTCTCCGTCGC-ATCCTTGATGTACGTGTCAATGA 1997 Query 39900 ACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATC 39959 ||| ||||| ||||| |||||||| || || || ||||| || ||||| || || | Sbjct 1998 GCAGCGAATACACCTCTGAGTGGATGTTCTCGATGGCGATCTGGAAACCGTAGAAGCAGC 2057 Query 39960 TTGCTTCAGTAATTTGTACCTC--TGAACAAAATCTTTCCGCCAAATTTTCATTCACTAT 40017 || || | | || || || || || || | |||| || || ||||| || Sbjct 2058 GGGCCTCCGGCACCTGCACTTCATTGCTGAAGTTCAT--GGCCAGGTTCTCGTTCACGAT 2115 Query 40018 TCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGT 40077 || || || || || || || |||| || || || || || | || | | || Sbjct 2116 GCCGTCGCTGGCAGCGAAGAAGGCCAGCACGTGCTTGATGAAGAACCGCTCGTTGTCCGT 2175 Query 40078 CAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGA 40137 || || |||||| |||| || | | || | || || || ||||| || || Sbjct 2176 CAGGTTCGCCCAGTCCTTGAGGTCGTGCACCAGGTCCAGCTCCTCGGCCGTCCAGAATGA 2235 Query 40138 CGCCTCTGCCTTTTTGTACATGTTCCA 40164 |||||| ||||| |||||||| | ||| Sbjct 2236 CGCCTCCGCCTTCTTGTACATCTGCCA 2262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686835438140160